Bombyx BLAST Result against bee

BLASTX 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= BmNP11_T7_I11
         (831 letters)

Database: bee 
           438 sequences; 146,343 total letters

Searching......................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

DQ667187-1|ABG75739.1|  428|Apis mellifera histamine-gated chlor...    23   4.6  
AB264335-1|BAF44090.1|   87|Apis mellifera ecdysone-induced prot...    22   6.0  
AB264313-1|BAF43600.1|  900|Apis mellifera ecdysone-induced prot...    22   6.0  
AY661557-1|AAT74557.1|  411|Apis mellifera yellow-f-like protein...    22   8.0  
AJ517411-1|CAD56944.1| 1770|Apis mellifera vitellogenin precurso...    22   8.0  

>DQ667187-1|ABG75739.1|  428|Apis mellifera histamine-gated chloride
           channel protein.
          Length = 428

 Score = 22.6 bits (46), Expect = 4.6
 Identities = 9/13 (69%), Positives = 9/13 (69%)
 Frame = +3

Query: 225 PATRPPVPSFSGP 263
           PA  PP PS SGP
Sbjct: 341 PAPPPPPPSSSGP 353


>AB264335-1|BAF44090.1|   87|Apis mellifera ecdysone-induced protein
           75 protein.
          Length = 87

 Score = 22.2 bits (45), Expect = 6.0
 Identities = 12/49 (24%), Positives = 21/49 (42%)
 Frame = -3

Query: 292 CNAAPSKRALGPLNEGTGGRVAGGHRSGVRGTVGWM*CALCQPCPAVSI 146
           C++  S  + G  +EG  G   G  R  ++  + +  C   Q C  + I
Sbjct: 18  CSSGSSSDSDGQTDEGFVGDSQGFFRRSIQQKIQYRPCTKNQQCSILRI 66


>AB264313-1|BAF43600.1|  900|Apis mellifera ecdysone-induced protein
           75 protein.
          Length = 900

 Score = 22.2 bits (45), Expect = 6.0
 Identities = 9/18 (50%), Positives = 11/18 (61%)
 Frame = +3

Query: 72  LNLTKNSCRSQPAPYLGP 125
           LNL+K S    P P +GP
Sbjct: 875 LNLSKKSPSPSPRPLVGP 892


>AY661557-1|AAT74557.1|  411|Apis mellifera yellow-f-like protein
           protein.
          Length = 411

 Score = 21.8 bits (44), Expect = 8.0
 Identities = 6/16 (37%), Positives = 10/16 (62%)
 Frame = -1

Query: 639 WSQK*NLTCPAWRRGI 592
           W+ K  +T P W+ G+
Sbjct: 59  WNDKVFITIPRWKNGV 74


>AJ517411-1|CAD56944.1| 1770|Apis mellifera vitellogenin precursor
           protein.
          Length = 1770

 Score = 21.8 bits (44), Expect = 8.0
 Identities = 9/24 (37%), Positives = 15/24 (62%), Gaps = 1/24 (4%)
 Frame = +1

Query: 508 TRPXXSFCEMVH-SQXSSIAFHDS 576
           T    SFCEM+H +Q +  + H++
Sbjct: 566 TAATLSFCEMIHNAQVNKRSIHNN 589


  Database: bee
    Posted date:  Oct 23, 2007  1:17 PM
  Number of letters in database: 146,343
  Number of sequences in database:  438
  
Lambda     K      H
   0.318    0.134    0.401 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 219,290
Number of Sequences: 438
Number of extensions: 5668
Number of successful extensions: 15
Number of sequences better than 10.0: 5
Number of HSP's better than 10.0 without gapping: 14
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 15
length of database: 146,343
effective HSP length: 57
effective length of database: 121,377
effective search space used: 26581563
frameshift window, decay const: 40,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)