Bombyx BLAST Result against rice

BLASTX 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= BmNP11_T7_I10
         (926 letters)

Database: rice 
           37,544 sequences; 14,793,348 total letters

Searching..................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

06_02_0119 + 12040476-12041273,12042767-12042834,12042931-12042979     27   0.60 
02_05_0686 - 30900748-30902167,30903442-30904742                       25   2.7  
10_01_0129 + 1535823-1537196                                           29   4.0  
04_03_0018 - 9434088-9434141,9434211-9434282,9434968-9435062,943...    27   4.3  
06_03_0867 + 25534760-25539620,25540662-25540857,25540957-255411...    24   7.0  
04_03_0977 + 21381857-21383757,21384299-21384458,21384669-213847...    23   9.8  

>06_02_0119 + 12040476-12041273,12042767-12042834,12042931-12042979
          Length = 304

 Score = 26.6 bits (56), Expect(2) = 0.60
 Identities = 15/44 (34%), Positives = 16/44 (36%)
 Frame = -3

Query: 321 KXKKXVFPPPPXXXFPPXGGGKXXPNXFXQNPXGGFKXKNXXPP 190
           K K+   PPPP    PP G      N    NP G        PP
Sbjct: 78  KPKQQQHPPPPPPQKPPQGS----TNLSLPNPSGSGSGNGNPPP 117



 Score = 24.2 bits (50), Expect(2) = 0.60
 Identities = 8/14 (57%), Positives = 9/14 (64%)
 Frame = -3

Query: 447 PPPPXXKXKKXPPP 406
           PPPP    K+ PPP
Sbjct: 58  PPPPPQPAKEPPPP 71


>02_05_0686 - 30900748-30902167,30903442-30904742
          Length = 906

 Score = 25.0 bits (52), Expect(2) = 2.7
 Identities = 13/37 (35%), Positives = 14/37 (37%)
 Frame = -3

Query: 300 PPPPXXXFPPXGGGKXXPNXFXQNPXGGFKXKNXXPP 190
           PPPP    PP       P+     P GG K     PP
Sbjct: 345 PPPPPAKGPPPPPPPKGPSPPPPPPPGGKKGGPPPPP 381



 Score = 23.4 bits (48), Expect(2) = 2.7
 Identities = 8/14 (57%), Positives = 8/14 (57%)
 Frame = -3

Query: 447 PPPPXXKXKKXPPP 406
           PPPP  K    PPP
Sbjct: 336 PPPPPPKGPPPPPP 349


>10_01_0129 + 1535823-1537196
          Length = 457

 Score = 29.5 bits (63), Expect = 4.0
 Identities = 18/70 (25%), Positives = 22/70 (31%)
 Frame = -3

Query: 618 GGGGGGXXPPTXXPPXXKKKKXPPXRXXFFFXXXXGGXXXXXXXXFLKXXPXGXXXXPPP 439
           GGGGGG   P   PP          R          G         ++  P      PPP
Sbjct: 12  GGGGGGGGAPRGSPPGGGSPLNSSRRSS--RRPRPSGSSPTSSPGQIRSPPDDGDGQPPP 69

Query: 438 PXXKXKKXPP 409
           P  + +  PP
Sbjct: 70  PRRRRRGEPP 79


>04_03_0018 - 9434088-9434141,9434211-9434282,9434968-9435062,
            9435445-9435526,9435610-9435660,9435749-9435829,
            9435965-9436006,9436117-9436215,9438130-9438201,
            9438557-9438680,9438850-9439723,9440274-9440456,
            9440941-9442741,9442825-9443049,9443117-9443814,
            9444519-9444591
          Length = 1541

 Score = 27.1 bits (57), Expect(2) = 4.3
 Identities = 9/12 (75%), Positives = 9/12 (75%)
 Frame = +2

Query: 590  GGXXPPPPPPXG 625
            GG  PPPPPP G
Sbjct: 1180 GGVAPPPPPPRG 1191



 Score = 20.6 bits (41), Expect(2) = 4.3
 Identities = 6/9 (66%), Positives = 7/9 (77%)
 Frame = +2

Query: 587  VGGXXPPPP 613
            +GG  PPPP
Sbjct: 1145 IGGVPPPPP 1153


>06_03_0867 +
           25534760-25539620,25540662-25540857,25540957-25541104,
           25541673-25541751,25542151-25542238,25542330-25542600,
           25542676-25542718,25542801-25542904,25543374-25543790
          Length = 2068

 Score = 24.2 bits (50), Expect(2) = 7.0
 Identities = 8/12 (66%), Positives = 8/12 (66%)
 Frame = -3

Query: 300 PPPPXXXFPPXG 265
           PPPP   FPP G
Sbjct: 106 PPPPHYGFPPRG 117



 Score = 22.6 bits (46), Expect(2) = 7.0
 Identities = 7/14 (50%), Positives = 9/14 (64%)
 Frame = -3

Query: 447 PPPPXXKXKKXPPP 406
           PPPP  + +  PPP
Sbjct: 95  PPPPLPQHRLEPPP 108


>04_03_0977 +
           21381857-21383757,21384299-21384458,21384669-21384717,
           21385117-21385169
          Length = 720

 Score = 23.4 bits (48), Expect(2) = 9.8
 Identities = 9/15 (60%), Positives = 9/15 (60%)
 Frame = +2

Query: 575 GGXXVGGXXPPPPPP 619
           GG  V    PPPPPP
Sbjct: 94  GGGWVQLPPPPPPPP 108



 Score = 23.0 bits (47), Expect(2) = 9.8
 Identities = 7/8 (87%), Positives = 7/8 (87%)
 Frame = +2

Query: 602 PPPPPPXG 625
           PPPPPP G
Sbjct: 105 PPPPPPQG 112


  Database: rice
    Posted date:  Oct 4, 2007 10:57 AM
  Number of letters in database: 14,793,348
  Number of sequences in database:  37,544
  
Lambda     K      H
   0.318    0.134    0.401 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 19,111,905
Number of Sequences: 37544
Number of extensions: 422664
Number of successful extensions: 4153
Number of sequences better than 10.0: 6
Number of HSP's better than 10.0 without gapping: 1799
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 3767
length of database: 14,793,348
effective HSP length: 82
effective length of database: 11,714,740
effective search space used: 2647531240
frameshift window, decay const: 40,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)