Last updated: 2022/11/18
BLASTX 2.2.12 [Aug-07-2005]
Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer,
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997),
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs", Nucleic Acids Res. 25:3389-3402.
Query= BmNP11_T7_I05
(853 letters)
Database: spombe
5004 sequences; 2,362,478 total letters
Searching..................................................done
Score E
Sequences producing significant alignments: (bits) Value
SPBP8B7.03c |rpl402|rpl4-2, rpl4|60S ribosomal protein L2|Schizo... 118 1e-27
SPBC1711.06 |rpl401|rpl4-1, rpl4|60S ribosomal protein L2|Schizo... 117 2e-27
SPAC6G9.10c |sen1||ATP-dependent 5' to 3' DNA/RNA helicase Sen1|... 28 1.5
SPAC1006.06 |rgf2||RhoGEF Rgf2|Schizosaccharomyces pombe|chr 1||... 28 1.5
SPBC902.06 |mto2||MT organizer Mto2|Schizosaccharomyces pombe|ch... 28 1.5
SPBC13E7.01 |cwf22|SPBC15D4.16|splicing factor Cwf22|Schizosacch... 28 1.5
SPCC14G10.04 |||sequence orphan|Schizosaccharomyces pombe|chr 3|... 26 5.9
SPAC11D3.14c |||oxoprolinase |Schizosaccharomyces pombe|chr 1|||... 26 7.8
>SPBP8B7.03c |rpl402|rpl4-2, rpl4|60S ribosomal protein
L2|Schizosaccharomyces pombe|chr 2|||Manual
Length = 363
Score = 118 bits (283), Expect = 1e-27
Identities = 77/194 (39%), Positives = 110/194 (56%), Gaps = 2/194 (1%)
Frame = -2
Query: 822 QALFFLRRXKAWFXIL*GVQXSXXXXXVRXKMXXRXXIPX*GAPS*XFNKDQGFXSXXPQ 643
+A+ L+ KA+ ++ V S + K+ R + G P FN+D G
Sbjct: 166 EAVALLKEIKAYRDVV-KVANSRKLRAGKGKLRNRRHVQRRG-PLVVFNEDAGIVKAFRN 223
Query: 642 XPPVWSS*MLTKLNLLKLAPGGHLGRFVIXTQSAFGRLDPLFGSWKTPSKQKKNFNLPQP 463
P V + +LNLL+LAPGGHLGRFVI T+SAFG LD +FGS ++ KKN+ LP+
Sbjct: 224 IPGV-EIVNVRRLNLLQLAPGGHLGRFVIWTKSAFGLLDSVFGSTTEAAQLKKNYFLPEN 282
Query: 462 KMANTDLTRLLKSDEIRKVLRAPN-KRVIRA-TRKLNPLTNNKAMLKLNPYAAVLKRKAI 289
++N D+TRL+ SDEI+ +++A RV RA +K NPL N + +LNPYA KA
Sbjct: 283 IISNADVTRLINSDEIQSIVKAAGPSRVKRAHVQKKNPLKNKAVLARLNPYAKAY--KAN 340
Query: 288 LELRRRKNLKALAD 247
++L K KA +
Sbjct: 341 VKLNTGKTPKAAGE 354
>SPBC1711.06 |rpl401|rpl4-1, rpl4|60S ribosomal protein
L2|Schizosaccharomyces pombe|chr 2|||Manual
Length = 363
Score = 117 bits (282), Expect = 2e-27
Identities = 76/194 (39%), Positives = 110/194 (56%), Gaps = 2/194 (1%)
Frame = -2
Query: 822 QALFFLRRXKAWFXIL*GVQXSXXXXXVRXKMXXRXXIPX*GAPS*XFNKDQGFXSXXPQ 643
+A+ L+ KA+ ++ V S + K+ R + G P FN+D G
Sbjct: 166 EAVALLKEIKAYRDVI-KVANSRKLRAGKGKLRNRRHVQRRG-PLVVFNEDTGIVKAFRN 223
Query: 642 XPPVWSS*MLTKLNLLKLAPGGHLGRFVIXTQSAFGRLDPLFGSWKTPSKQKKNFNLPQP 463
P V + +LNLL+LAPGGHLGRFVI T+SAFG LD +FGS ++ KKN+ LP+
Sbjct: 224 IPGV-EIVNVRRLNLLQLAPGGHLGRFVIWTKSAFGLLDSVFGSTTEVAQLKKNYFLPEN 282
Query: 462 KMANTDLTRLLKSDEIRKVLRAPN-KRVIRA-TRKLNPLTNNKAMLKLNPYAAVLKRKAI 289
++N D+TRL+ SDEI+ +++A RV RA +K NPL N + +LNPYA KA
Sbjct: 283 IISNADVTRLINSDEIQSIVKAAGPSRVKRAHVQKKNPLKNKAVLSRLNPYAKAY--KAN 340
Query: 288 LELRRRKNLKALAD 247
+++ K KA +
Sbjct: 341 VKINSEKTPKAAGE 354
>SPAC6G9.10c |sen1||ATP-dependent 5' to 3' DNA/RNA helicase
Sen1|Schizosaccharomyces pombe|chr 1|||Manual
Length = 1687
Score = 28.3 bits (60), Expect = 1.5
Identities = 27/109 (24%), Positives = 46/109 (42%)
Frame = -2
Query: 495 KQKKNFNLPQPKMANTDLTRLLKSDEIRKVLRAPNKRVIRATRKLNPLTNNKAMLKLNPY 316
KQK + + Q K LT+ S E + VL +R T+K LTN+ ++K +P
Sbjct: 730 KQKAHLSADQCKQLANVLTQA--SPEAKTVLEQHRLSEMRKTKKQTELTNSAHVIKPSPT 787
Query: 315 AAVLKRKAILELRRRKNLKALADAEKSGLKLSKRNPAMKAEKLRERRRK 169
+ ++ + + L ++ L+KRN K + RK
Sbjct: 788 PQITVKQNTTKSSSAPRMGMLEQLKQE--YLTKRNFESKLKSSAVSSRK 834
>SPAC1006.06 |rgf2||RhoGEF Rgf2|Schizosaccharomyces pombe|chr
1|||Manual
Length = 1158
Score = 28.3 bits (60), Expect = 1.5
Identities = 19/54 (35%), Positives = 33/54 (61%)
Frame = +1
Query: 313 RVRIEFQHRLVIGERVQFACSTDHAFVGSTEDLPDLIRLEKTCEVSVGHLWLGQ 474
+V +EF+ RL IG+RV+ AF+GS E + L+ + +T + ++ L LG+
Sbjct: 207 QVAVEFRKRLNIGDRVKDGLLYKDAFLGS-EAVDVLMHIVRTTDRNLA-LLLGR 258
>SPBC902.06 |mto2||MT organizer Mto2|Schizosaccharomyces pombe|chr
2|||Manual
Length = 397
Score = 28.3 bits (60), Expect = 1.5
Identities = 16/45 (35%), Positives = 23/45 (51%)
Frame = -3
Query: 572 LDVSSSXLSPHSAGLTPYSGHGRHHRNKRRTSTCPSQRWPTLTSH 438
+D+ S+ LS H+ T +S R H ST PSQ + + SH
Sbjct: 299 VDLQSNELSHHNVRTTLFSDDSRFHSKIHTHSTPPSQMY-SAASH 342
>SPBC13E7.01 |cwf22|SPBC15D4.16|splicing factor
Cwf22|Schizosaccharomyces pombe|chr 2|||Manual
Length = 834
Score = 28.3 bits (60), Expect = 1.5
Identities = 19/90 (21%), Positives = 43/90 (47%), Gaps = 2/90 (2%)
Frame = -2
Query: 429 KSDEIRKVLRAPNKRVIRATRKLNPLTNNKAMLKLNPYAAVLKRKAILELRRRKNLKA-- 256
+S + + +K+ IR R+L+P ++ + N Y+ + + ++ R R
Sbjct: 659 RSRSVTPINNINHKKYIRKDRELSPRGRERSSNR-NSYSDLSRSSSLSRGRSRSYTPEGR 717
Query: 255 LADAEKSGLKLSKRNPAMKAEKLRERRRKN 166
L ++E G + +PA + + R+R R++
Sbjct: 718 LIESEDKGYRSRSSSPASRKYRSRQRYRRS 747
>SPCC14G10.04 |||sequence orphan|Schizosaccharomyces pombe|chr
3|||Manual
Length = 497
Score = 26.2 bits (55), Expect = 5.9
Identities = 12/26 (46%), Positives = 14/26 (53%)
Frame = -3
Query: 566 VSSSXLSPHSAGLTPYSGHGRHHRNK 489
VS S HS P+S GRH+R K
Sbjct: 120 VSRSSSIGHSGSTAPWSSVGRHNRKK 145
>SPAC11D3.14c |||oxoprolinase |Schizosaccharomyces pombe|chr
1|||Manual
Length = 1260
Score = 25.8 bits (54), Expect = 7.8
Identities = 15/46 (32%), Positives = 22/46 (47%)
Frame = +3
Query: 570 QDDLPEPASGGSALLTFRSSTPGDXAEXANXNPDPC*XIMXGPLTL 707
Q D+ A+GG + L +R+ E A P P + GPLT+
Sbjct: 345 QLDIQTVAAGGGSRLFWRNQLFSVGPESAGAFPGPACYLNGGPLTV 390
Database: spombe
Posted date: Oct 4, 2007 10:57 AM
Number of letters in database: 2,362,478
Number of sequences in database: 5004
Lambda K H
0.318 0.134 0.401
Gapped
Lambda K H
0.279 0.0580 0.190
Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 2,563,620
Number of Sequences: 5004
Number of extensions: 43832
Number of successful extensions: 123
Number of sequences better than 10.0: 8
Number of HSP's better than 10.0 without gapping: 120
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 121
length of database: 2,362,478
effective HSP length: 72
effective length of database: 2,002,190
effective search space used: 422462090
frameshift window, decay const: 40, 0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)
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