Last updated: 2022/11/18
BLASTX 2.2.12 [Aug-07-2005]
Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer,
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997),
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs", Nucleic Acids Res. 25:3389-3402.
Query= BmNP11_T7_I05
(853 letters)
Database: rice
37,544 sequences; 14,793,348 total letters
Searching..................................................done
Score E
Sequences producing significant alignments: (bits) Value
07_01_0578 + 4295386-4296489,4297394-4297507 129 3e-30
03_06_0298 - 32925441-32925998,32926371-32926730,32927161-329272... 124 9e-29
03_02_0027 + 5100865-5100878,5102241-5102708,5102795-5103021,510... 31 1.5
11_01_0205 + 1617044-1617197,1617845-1618233 30 2.7
02_05_1166 - 34633770-34634301,34634559-34635181,34635279-34637216 30 2.7
09_04_0151 - 15154063-15154296,15155616-15155660,15155749-151558... 29 3.6
09_02_0570 + 10786779-10787144,10787353-10787547,10787647-107878... 29 3.6
02_05_0897 + 32603060-32603387,32604348-32604589,32604681-326048... 29 4.7
02_04_0073 - 19471254-19472681 29 4.7
>07_01_0578 + 4295386-4296489,4297394-4297507
Length = 405
Score = 129 bits (311), Expect = 3e-30
Identities = 64/128 (50%), Positives = 90/128 (70%), Gaps = 1/128 (0%)
Frame = -2
Query: 609 KLNLLKLAPGGHLGRFVIXTQSAFGRLDPLFGSWKTPSKQKKNFNLPQPKMANTDLTRLL 430
+LNLL LAPGGHLGRFVI T+SAF +L+ ++G+++ PS +KK F LP+PKMAN DL R++
Sbjct: 239 RLNLLDLAPGGHLGRFVIWTESAFKKLEEVYGTFEAPSLKKKGFILPRPKMANADLGRII 298
Query: 429 KSDEIRKVLRAPNKRVIRATRKLNPLTNNKAMLKLNPYAAVLKRKAIL-ELRRRKNLKAL 253
SDE++ V++ NK V R ++ NPL N A+LKLNPY ++ A L E R K K
Sbjct: 299 NSDEVQSVVKPLNKEVKRREKRKNPLKNVAAVLKLNPYFGTARKMATLAEAARIKARKEK 358
Query: 252 ADAEKSGL 229
D++++ L
Sbjct: 359 LDSKRTKL 366
>03_06_0298 -
32925441-32925998,32926371-32926730,32927161-32927230,
32927642-32927797,32929181-32929242,32929339-32929352,
32930421-32930520,32931474-32932574
Length = 806
Score = 124 bits (299), Expect = 9e-29
Identities = 65/141 (46%), Positives = 90/141 (63%), Gaps = 1/141 (0%)
Frame = -2
Query: 609 KLNLLKLAPGGHLGRFVIXTQSAFGRLDPLFGSWKTPSKQKKNFNLPQPKMANTDLTRLL 430
+LNLL LAPGGHLGRFVI T+ AF +LD ++G + TP+ +KK F LP+PKMAN DL+RL+
Sbjct: 238 RLNLLDLAPGGHLGRFVIWTECAFKKLDEVYGGFDTPALKKKGFVLPRPKMANADLSRLI 297
Query: 429 KSDEIRKVLRAPNKRVIRATRKLNPLTNNKAMLKLNPYAAVLKRKAIL-ELRRRKNLKAL 253
SDE++ V++ NK V + NPL N A+LKLNPY ++ A L E R K
Sbjct: 298 NSDEVQSVVKPINKEVKLREARRNPLKNVAAVLKLNPYFGTARKMAALAEAARVKARTEK 357
Query: 252 ADAEKSGLKLSKRNPAMKAEK 190
D++++ L + + A K
Sbjct: 358 LDSKRTKLSPEESSKIKAAGK 378
>03_02_0027 +
5100865-5100878,5102241-5102708,5102795-5103021,
5103670-5104577
Length = 538
Score = 30.7 bits (66), Expect = 1.5
Identities = 23/75 (30%), Positives = 34/75 (45%), Gaps = 2/75 (2%)
Frame = -3
Query: 602 TS*SWLREVILDVSSSXLSPHSAGLTPYSGHGRHHRNKRRTSTCPSQ--RWPTLTSHVFS 429
+S S+LR + LD+SSS +P S+ H HH+ + S WP S
Sbjct: 376 SSSSFLRCLGLDMSSSSSAPPSSSGQQQQHHHHHHQETMQVPLPASSLPEWPPRLQPEPS 435
Query: 428 SLMRSGRSSVLPTNA 384
++ SG LP +A
Sbjct: 436 PMLSSGLGLGLPYDA 450
>11_01_0205 + 1617044-1617197,1617845-1618233
Length = 180
Score = 29.9 bits (64), Expect = 2.7
Identities = 11/30 (36%), Positives = 18/30 (60%)
Frame = +1
Query: 322 IEFQHRLVIGERVQFACSTDHAFVGSTEDL 411
++ HRLV G+ +F +H FV S ++L
Sbjct: 35 LQISHRLVAGQNYEFQSGINHGFVNSRKNL 64
>02_05_1166 - 34633770-34634301,34634559-34635181,34635279-34637216
Length = 1030
Score = 29.9 bits (64), Expect = 2.7
Identities = 19/49 (38%), Positives = 28/49 (57%), Gaps = 2/49 (4%)
Frame = -2
Query: 588 APG--GHLGRFVIXTQSAFGRLDPLFGSWKTPSKQKKNFNLPQPKMANT 448
APG G GR+V+ SA LDP F SW S++ K F++ + A++
Sbjct: 670 APGVDGCSGRYVVAA-SAGNALDPGFCSWDYYSREAKAFHIEEISHASS 717
>09_04_0151 -
15154063-15154296,15155616-15155660,15155749-15155820,
15155932-15156024,15156282-15156351,15156716-15156912,
15156946-15157215,15158620-15158757,15158841-15158930,
15159041-15159247,15159987-15160154,15160300-15160503,
15160584-15160670,15160748-15160861,15161689-15161835,
15161914-15162063,15162211-15162276,15162376-15162480,
15162625-15162798,15162930-15163154,15163534-15163590,
15163858-15164019,15164234-15164302,15164391-15164471,
15164823-15164925,15165011-15165156,15165285-15165359,
15165441-15165508,15165586-15165667,15165745-15165858,
15166358-15166476,15166692-15166781,15166862-15166988
Length = 1382
Score = 29.5 bits (63), Expect = 3.6
Identities = 32/145 (22%), Positives = 69/145 (47%), Gaps = 4/145 (2%)
Frame = -2
Query: 597 LKLAPGGHLGRFVIXTQSAFGRL-DPLFGSW-KTPSKQKKNFNLPQPKMANTDLTRLLKS 424
++L G H+ + ++ + +L + + G P + K + QP + T ++ +
Sbjct: 244 VRLKEGSHINKSLMTLGTVIKKLSEGIEGQGGHVPYRDSKLTRILQPALGGNANTAIICN 303
Query: 423 DEIRKVLRAPNKRVIRATRKLNPLTNNKAMLKLNPYAAVLK--RKAILELRRRKNLKALA 250
+ +V K ++ + +TN + ++ AA+LK RK I ELR + L++
Sbjct: 304 ITLAQVHADETKSSLQFASRALRVTNCACVNEILTDAALLKRQRKEIEELRAK--LRSEL 361
Query: 249 DAEKSGLKLSKRNPAMKAEKLRERR 175
+ E+ L+L + KA++ R++R
Sbjct: 362 EKERISLELEEEK---KAKEQRDKR 383
>09_02_0570 +
10786779-10787144,10787353-10787547,10787647-10787826,
10787925-10788119,10789629-10789727,10789822-10790328,
10790438-10790779
Length = 627
Score = 29.5 bits (63), Expect = 3.6
Identities = 29/116 (25%), Positives = 51/116 (43%), Gaps = 4/116 (3%)
Frame = -2
Query: 507 KTPSKQKKNFNLPQPKMANTDLTR---LLKSDEIRKVLRAPNKRVIRATR-KLNPLTNNK 340
K P+KQ K PQ +++ D +R + K + + L A + + + K P +
Sbjct: 409 KMPAKQAKEAPAPQAEVSPKDESRVKAIAKPSKAKSSLDADDDYEAESPKEKPKPKEVDV 468
Query: 339 AMLKLNPYAAVLKRKAILELRRRKNLKALADAEKSGLKLSKRNPAMKAEKLRERRR 172
A LK +++ L L R+K L A+ + + +K E++R RRR
Sbjct: 469 AKLKEIKRQEEMEKNR-LALERKKKLAEKQAAKAAARAQKEAEKKLKREEMRARRR 523
>02_05_0897 +
32603060-32603387,32604348-32604589,32604681-32604824,
32604889-32605050,32605129-32605212,32605528-32605601,
32605850-32606039,32606120-32606275,32606368-32606465,
32606976-32607102,32607193-32607292,32607402-32607572,
32607790-32607838,32607912-32608003,32608705-32608774,
32608999-32609023,32609059-32609293,32609425-32609525,
32609614-32609865
Length = 899
Score = 29.1 bits (62), Expect = 4.7
Identities = 15/61 (24%), Positives = 32/61 (52%)
Frame = -2
Query: 618 MLTKLNLLKLAPGGHLGRFVIXTQSAFGRLDPLFGSWKTPSKQKKNFNLPQPKMANTDLT 439
++T LN+ L+ H ++ Q G +DP FG++++ ++ ++ PK +T+
Sbjct: 511 IVTTLNIQALSVQAHNHASLLGDQLGMGTVDPRFGAFRSSARILQSPGRLPPKAPHTNYG 570
Query: 438 R 436
R
Sbjct: 571 R 571
>02_04_0073 - 19471254-19472681
Length = 475
Score = 29.1 bits (62), Expect = 4.7
Identities = 9/21 (42%), Positives = 14/21 (66%)
Frame = -3
Query: 548 SPHSAGLTPYSGHGRHHRNKR 486
+P G +P S HG HHR+++
Sbjct: 20 APRPRGASPLSSHGHHHRSRK 40
Database: rice
Posted date: Oct 4, 2007 10:57 AM
Number of letters in database: 14,793,348
Number of sequences in database: 37,544
Lambda K H
0.318 0.134 0.401
Gapped
Lambda K H
0.279 0.0580 0.190
Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 18,438,111
Number of Sequences: 37544
Number of extensions: 358170
Number of successful extensions: 916
Number of sequences better than 10.0: 9
Number of HSP's better than 10.0 without gapping: 895
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 916
length of database: 14,793,348
effective HSP length: 81
effective length of database: 11,752,284
effective search space used: 2373961368
frameshift window, decay const: 40, 0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)
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