Bombyx BLAST Result against rice

BLASTX 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= BmNP11_T7_I04
         (787 letters)

Database: rice 
           37,544 sequences; 14,793,348 total letters

Searching..................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

02_02_0733 + 13494794-13494917,13495077-13495181,13495582-13496867     29   4.2  
10_08_0473 - 18168147-18169396,18169756-18169878,18170002-18170065     28   9.7  
02_01_0280 + 1872874-1873000,1873100-1873183,1873258-1874504           28   9.7  

>02_02_0733 + 13494794-13494917,13495077-13495181,13495582-13496867
          Length = 504

 Score = 29.1 bits (62), Expect = 4.2
 Identities = 9/24 (37%), Positives = 14/24 (58%)
 Frame = -3

Query: 155 TRSYPNPFTILRDPYCSHDRGWKS 84
           +  YP    +L+DPY  H +GW +
Sbjct: 446 SEQYPKDDPVLKDPYSIHKQGWNA 469


>10_08_0473 - 18168147-18169396,18169756-18169878,18170002-18170065
          Length = 478

 Score = 27.9 bits (59), Expect = 9.7
 Identities = 9/24 (37%), Positives = 14/24 (58%)
 Frame = -3

Query: 155 TRSYPNPFTILRDPYCSHDRGWKS 84
           +  YP    +LRDP   H +GW++
Sbjct: 418 SEQYPADHPVLRDPMAIHKQGWEA 441


>02_01_0280 + 1872874-1873000,1873100-1873183,1873258-1874504
          Length = 485

 Score = 27.9 bits (59), Expect = 9.7
 Identities = 9/19 (47%), Positives = 11/19 (57%)
 Frame = -3

Query: 146 YPNPFTILRDPYCSHDRGW 90
           YP    +L DPY  H +GW
Sbjct: 433 YPRNHQVLTDPYAVHKQGW 451


  Database: rice
    Posted date:  Oct 4, 2007 10:57 AM
  Number of letters in database: 14,793,348
  Number of sequences in database:  37,544
  
Lambda     K      H
   0.318    0.134    0.401 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 13,333,487
Number of Sequences: 37544
Number of extensions: 246029
Number of successful extensions: 496
Number of sequences better than 10.0: 3
Number of HSP's better than 10.0 without gapping: 407
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 458
length of database: 14,793,348
effective HSP length: 81
effective length of database: 11,752,284
effective search space used: 2115411120
frameshift window, decay const: 40,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)