Bombyx BLAST Result against celegans

BLASTX 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= BmNP11_T7_I04
         (787 letters)

Database: celegans 
           27,780 sequences; 12,740,198 total letters

Searching..................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

Z68338-7|CAA92756.2|  866|Caenorhabditis elegans Hypothetical pr...    29   3.8  
AL032652-4|CAB63398.1|  486|Caenorhabditis elegans Hypothetical ...    29   3.8  
AF003386-9|AAB54259.1| 1621|Caenorhabditis elegans Hypothetical ...    29   3.8  

>Z68338-7|CAA92756.2|  866|Caenorhabditis elegans Hypothetical
           protein T24B8.4 protein.
          Length = 866

 Score = 29.1 bits (62), Expect = 3.8
 Identities = 15/42 (35%), Positives = 15/42 (35%)
 Frame = +1

Query: 250 PPXXXFFXXXKPXXXGGXGXPXFXXXLGXKXPPPXXGGXPPP 375
           PP         P   GG   P      G   PPP  GG PPP
Sbjct: 66  PPPVPNGFIPPPPGPGGIPPPPPMFAGGIPPPPPMMGGIPPP 107



 Score = 28.3 bits (60), Expect = 6.6
 Identities = 19/66 (28%), Positives = 21/66 (31%)
 Frame = +1

Query: 220 PXSIKGGGKAPPXXXFFXXXKPXXXGGXGXPXFXXXLGXKXPPPXXGGXPPPXXXXSHXX 399
           P  +  G   PP         P    G G P     +G   PPP   G PPP    S   
Sbjct: 66  PPPVPNGFIPPPPGPGGIPPPPPMFAG-GIPPPPPMMGGIPPPPPMFGAPPPPPPPSGLG 124

Query: 400 SXPXXP 417
             P  P
Sbjct: 125 VAPQPP 130


>AL032652-4|CAB63398.1|  486|Caenorhabditis elegans Hypothetical
           protein Y63D3A.5 protein.
          Length = 486

 Score = 29.1 bits (62), Expect = 3.8
 Identities = 24/78 (30%), Positives = 25/78 (32%), Gaps = 5/78 (6%)
 Frame = +1

Query: 157 PKPFKXPPTXXRXNXXXXXXXPXSIKGGGKAPPXXXFFXXXKPXXXGGXG--XPXFXXXL 330
           P+ F  PP             P S   G  APP   F     P   GG G   P      
Sbjct: 361 PQSFGGPPPPVSSAPGNFAPPPQSGPPGAFAPPPSAFGAPQGPGGPGGYGPPPPGGPGAP 420

Query: 331 GXKXPP---PXXGGXPPP 375
           G   PP   P   G PPP
Sbjct: 421 GSYGPPQGGPGGFGPPPP 438


>AF003386-9|AAB54259.1| 1621|Caenorhabditis elegans Hypothetical
            protein F59E12.9 protein.
          Length = 1621

 Score = 29.1 bits (62), Expect = 3.8
 Identities = 16/46 (34%), Positives = 17/46 (36%)
 Frame = +1

Query: 238  GGKAPPXXXFFXXXKPXXXGGXGXPXFXXXLGXKXPPPXXGGXPPP 375
            GG  PP         P   GG   P     +    PPP  GG PPP
Sbjct: 1571 GGPPPPRGGSHCQGPPPLMGG---PPPRLGMPPPGPPPPNGGPPPP 1613


  Database: celegans
    Posted date:  Oct 23, 2007  1:18 PM
  Number of letters in database: 12,740,198
  Number of sequences in database:  27,780
  
Lambda     K      H
   0.318    0.134    0.401 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 8,904,254
Number of Sequences: 27780
Number of extensions: 151160
Number of successful extensions: 474
Number of sequences better than 10.0: 3
Number of HSP's better than 10.0 without gapping: 222
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 353
length of database: 12,740,198
effective HSP length: 80
effective length of database: 10,517,798
effective search space used: 1903721438
frameshift window, decay const: 40,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)