Last updated: 2022/11/18
BLASTX 2.2.12 [Aug-07-2005]
Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer,
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997),
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs", Nucleic Acids Res. 25:3389-3402.
Query= BmNP11_T7_I03
(804 letters)
Database: rice
37,544 sequences; 14,793,348 total letters
Searching..................................................done
Score E
Sequences producing significant alignments: (bits) Value
02_04_0232 + 21130122-21130454,21130895-21131053,21131424-211315... 33 0.35
06_03_1055 - 27234824-27234838,27236087-27236125,27236322-272373... 31 1.4
07_03_0846 - 21983581-21986055 29 3.3
05_04_0396 - 20934444-20934969,20935042-20935316,20935447-20935581 29 3.3
07_03_1086 + 23858419-23859423,23859527-23859610 29 5.7
06_03_0034 - 15727569-15727826,15728483-15728713,15728789-157291... 28 7.6
01_06_0695 - 31292622-31293317 28 7.6
09_01_0184 + 2693576-2693578,2694157-2694952,2695169-2695249,269... 28 10.0
08_02_0104 + 12404890-12405129,12405244-12405333,12405953-124060... 28 10.0
04_04_0468 - 25447774-25447945,25449016-25449130,25449541-254498... 28 10.0
04_01_0587 + 7654490-7655095,7655162-7655512,7655911-7656423 28 10.0
03_05_0951 + 29093962-29094373,29095291-29095388,29095689-290960... 28 10.0
03_04_0242 - 19238016-19238679,19239487-19239929 28 10.0
>02_04_0232 +
21130122-21130454,21130895-21131053,21131424-21131582,
21132420-21132512,21133321-21133437,21133623-21133697,
21133878-21134104,21134200-21135073
Length = 678
Score = 32.7 bits (71), Expect = 0.35
Identities = 17/43 (39%), Positives = 20/43 (46%)
Frame = +3
Query: 75 PSTTPRQERKSSTDYSEPRHRTELYPDLRSRDARVKKKTDSID 203
PS TP ER S+D PR Y R+RD K+ S D
Sbjct: 365 PSDTPHLERSQSSDRRRPRSSDPRYTPSRTRDEDAHKQHSSRD 407
>06_03_1055 -
27234824-27234838,27236087-27236125,27236322-27237388,
27237422-27237630,27237650-27238053
Length = 577
Score = 30.7 bits (66), Expect = 1.4
Identities = 16/45 (35%), Positives = 27/45 (60%)
Frame = -3
Query: 343 ASLAESGKDMLTVEPRESGGSKQCDFTSRVSHSKRETRRRSPFGS 209
A+ A +GK + E E S+QCD T + +S RE ++R+P+ +
Sbjct: 430 AAAAAAGKPISEHEAIEHLWSRQCDLTEILQNSSRE-KKRNPYAA 473
>07_03_0846 - 21983581-21986055
Length = 824
Score = 29.5 bits (63), Expect = 3.3
Identities = 19/50 (38%), Positives = 26/50 (52%)
Frame = +3
Query: 201 DLRDPNGLRRRVSRFECETRLVKSHCLEPPDSRGSTVSISLPDSARLASA 350
DL+D G +R +C+T S PD S VS+ LPD+A+ A A
Sbjct: 326 DLQDFTGGCKRNVPLQCQTN--SSSAQTQPDKFYSMVSVRLPDNAQSAVA 373
>05_04_0396 - 20934444-20934969,20935042-20935316,20935447-20935581
Length = 311
Score = 29.5 bits (63), Expect = 3.3
Identities = 16/34 (47%), Positives = 19/34 (55%), Gaps = 1/34 (2%)
Frame = -3
Query: 430 GHLVHALGR-AAGGAKLPSAGLCLNASKAEASLA 332
G LV L R GG SAG+C S+ +ASLA
Sbjct: 203 GRLVETLARDGGGGGGAYSAGVCFYGSRMDASLA 236
>07_03_1086 + 23858419-23859423,23859527-23859610
Length = 362
Score = 28.7 bits (61), Expect = 5.7
Identities = 25/76 (32%), Positives = 32/76 (42%), Gaps = 5/76 (6%)
Frame = -3
Query: 490 LLMACRCDSNTAQYERNRSFGHLVHALGRAAGGAKLPSAGLCLNA-----SKAEASLAES 326
LL CD N A + LVHAL AA A +A L A AS+ +
Sbjct: 129 LLNLSICDENKAIIVEAGAIRPLVHALKSAASPAARENAACALLRLSQLDGSAAASIGRA 188
Query: 325 GKDMLTVEPRESGGSK 278
G L V E+GG++
Sbjct: 189 GAIPLLVSLLETGGAR 204
>06_03_0034 -
15727569-15727826,15728483-15728713,15728789-15729151,
15729260-15729413,15729997-15730275,15730328-15730770
Length = 575
Score = 28.3 bits (60), Expect = 7.6
Identities = 18/53 (33%), Positives = 29/53 (54%)
Frame = +3
Query: 561 RLANFCFAMIGRADIEGSKSNVAMNTWLPQASYPWWVTFLAPLAKTLYTKGSI 719
RL F F+++GRA ++ A+NTW + S + + F P+ KT +G I
Sbjct: 78 RLRLFLFSLLGRAKQWFYANHAAVNTW-DKCSTAFLLKFF-PMGKTNALRGRI 128
>01_06_0695 - 31292622-31293317
Length = 231
Score = 28.3 bits (60), Expect = 7.6
Identities = 16/45 (35%), Positives = 18/45 (40%)
Frame = +3
Query: 27 PGAGLSLNRSQHDAALPSTTPRQERKSSTDYSEPRHRTELYPDLR 161
P L Q D PS++ SST S P HR L P R
Sbjct: 3 PSTKQLLPMPQQDPNSPSSSTSSSSSSSTSPSHPHHRAPLPPSPR 47
>09_01_0184 +
2693576-2693578,2694157-2694952,2695169-2695249,
2695454-2695793,2695799-2696258,2696404-2696526,
2696532-2697266
Length = 845
Score = 27.9 bits (59), Expect = 10.0
Identities = 25/81 (30%), Positives = 37/81 (45%)
Frame = +3
Query: 561 RLANFCFAMIGRADIEGSKSNVAMNTWLPQASYPWWVTFLAPLAKTLYTKGSIGRAFAVP 740
RL F F+++GRA + A+NTW + S + F P+ KT +G I +F
Sbjct: 38 RLRLFPFSLLGRAKQWFYANRAAINTW-DKCSMAFLSKFF-PMGKTNALRGRIS-SFQ-Q 93
Query: 741 MRSEHLDQAXFXPLLPRGXCP 803
R E + +A P CP
Sbjct: 94 TRDESIPKAWERPQEHVAACP 114
>08_02_0104 +
12404890-12405129,12405244-12405333,12405953-12406036,
12406888-12407132,12409032-12409095,12409270-12409968,
12410063-12410176,12410287-12410418,12410594-12410770,
12411085-12411138,12411230-12411292,12411396-12412307,
12412408-12412535,12413680-12413962
Length = 1094
Score = 27.9 bits (59), Expect = 10.0
Identities = 19/61 (31%), Positives = 26/61 (42%)
Frame = +3
Query: 21 ESPGAGLSLNRSQHDAALPSTTPRQERKSSTDYSEPRHRTELYPDLRSRDARVKKKTDSI 200
+SPG L R HD +L KSST + R E SR +KT+S+
Sbjct: 734 DSPGDSL---RDVHDISLNLKLSLDSEKSSTKENSVRRNLEDAVQKLSRGVSANRKTESV 790
Query: 201 D 203
+
Sbjct: 791 E 791
>04_04_0468 - 25447774-25447945,25449016-25449130,25449541-25449877,
25450299-25450628,25451090-25451362,25451471-25451929,
25452307-25452516,25452617-25452828,25453304-25453404,
25453584-25454008,25454167-25454360,25454436-25454701,
25454809-25455015,25455121-25455281,25455741-25455933,
25456158-25456251,25457238-25457373,25458074-25458202,
25458315-25458449,25458549-25458613,25459875-25459950,
25460775-25460885,25461194-25461371,25462340-25462434
Length = 1557
Score = 27.9 bits (59), Expect = 10.0
Identities = 10/19 (52%), Positives = 10/19 (52%)
Frame = +1
Query: 739 LCVLNIWIKPXFXLCSREG 795
LC N W P F LC EG
Sbjct: 1477 LCAANYWKPPEFKLCKEEG 1495
>04_01_0587 + 7654490-7655095,7655162-7655512,7655911-7656423
Length = 489
Score = 27.9 bits (59), Expect = 10.0
Identities = 19/53 (35%), Positives = 28/53 (52%)
Frame = +3
Query: 561 RLANFCFAMIGRADIEGSKSNVAMNTWLPQASYPWWVTFLAPLAKTLYTKGSI 719
RL F F+++GRA + VA+NTW + S + F P+ KT +G I
Sbjct: 78 RLRLFPFSLLGRAKQWFYANRVAINTW-DKCSTTFLSKFF-PMGKTKALRGRI 128
>03_05_0951 +
29093962-29094373,29095291-29095388,29095689-29096087,
29096999-29097724,29097802-29097968,29098046-29098311,
29098396-29098581,29099072-29099346,29099435-29099683
Length = 925
Score = 27.9 bits (59), Expect = 10.0
Identities = 23/65 (35%), Positives = 30/65 (46%), Gaps = 2/65 (3%)
Frame = -3
Query: 352 KAEASLAESGKDMLTVEP-RESGGSKQCDFTSRVSHSKRETR-RRSPFGSRRSMLSVFFL 179
K+ AS A G D P R GG K+ S + SKR + R + F +L L
Sbjct: 4 KSSASAAHQGGDAPAEAPRRRGGGGKRKSGGSSFTPSKRHAKERNAAFHVPPHLLHSGPL 63
Query: 178 TRASR 164
TRA+R
Sbjct: 64 TRAAR 68
>03_04_0242 - 19238016-19238679,19239487-19239929
Length = 368
Score = 27.9 bits (59), Expect = 10.0
Identities = 18/53 (33%), Positives = 28/53 (52%)
Frame = +3
Query: 561 RLANFCFAMIGRADIEGSKSNVAMNTWLPQASYPWWVTFLAPLAKTLYTKGSI 719
RL F F+++GRA + A+NTW + S + + F P+ KT +G I
Sbjct: 78 RLRLFSFSLLGRAKQWFYANRAAVNTW-DKCSTAFLLKFF-PIGKTNALRGRI 128
Database: rice
Posted date: Oct 4, 2007 10:57 AM
Number of letters in database: 14,793,348
Number of sequences in database: 37,544
Lambda K H
0.318 0.134 0.401
Gapped
Lambda K H
0.279 0.0580 0.190
Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 22,783,591
Number of Sequences: 37544
Number of extensions: 502391
Number of successful extensions: 1469
Number of sequences better than 10.0: 13
Number of HSP's better than 10.0 without gapping: 1424
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 1468
length of database: 14,793,348
effective HSP length: 81
effective length of database: 11,752,284
effective search space used: 2185924824
frameshift window, decay const: 40, 0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)
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