Bombyx BLAST Result against spombe

BLASTX 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= BmNP11_T7_I02
         (754 letters)

Database: spombe 
           5004 sequences; 2,362,478 total letters

Searching..................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

SPBC56F2.05c |||transcription factor |Schizosaccharomyces pombe|...    27   2.9  
SPBC119.17 ||SPBC577.01|metallopeptidase|Schizosaccharomyces pom...    26   5.0  
SPACUNK4.14 |mdb1||BRCT domain protein|Schizosaccharomyces pombe...    26   5.0  
SPAC22F3.03c |rdh54|tid1, mug34|ATP-dependent DNA helicase Rdh54...    26   6.6  
SPAC57A7.05 |||conserved protein |Schizosaccharomyces pombe|chr ...    26   6.6  
SPAC2C4.14c |ppk11||PAK-related kinase Ppk11|Schizosaccharomyces...    25   8.8  
SPBC1773.10c |||asparagine-tRNA ligase Ded81 |Schizosaccharomyce...    25   8.8  

>SPBC56F2.05c |||transcription factor |Schizosaccharomyces pombe|chr
           2|||Manual
          Length = 397

 Score = 27.1 bits (57), Expect = 2.9
 Identities = 24/103 (23%), Positives = 40/103 (38%)
 Frame = -2

Query: 513 VRQVSLPXLMACRCDSNTAQYERNRSFGHLVHALXRAAGGAKLPSAGLCLNASKAEASLA 334
           V + SLP        S+T+   R     H    L  ++    L S G    +S   +++ 
Sbjct: 256 VEKRSLPPQDFGNASSSTSAKRRRPDHNH-TSTLDASSSNTSLASTGPMTVSS---STVE 311

Query: 333 ESGKDMLTVEPRESGGSKQCDFTSRVSHSKRETRRRSPFGSRR 205
             GK+   V P  +      DF + +S S+    ++S  G  R
Sbjct: 312 RKGKEASEVNPNSTSSVTFSDFAAAISRSRCSRCKKSKKGCDR 354


>SPBC119.17 ||SPBC577.01|metallopeptidase|Schizosaccharomyces
           pombe|chr 2|||Manual
          Length = 992

 Score = 26.2 bits (55), Expect = 5.0
 Identities = 18/61 (29%), Positives = 27/61 (44%), Gaps = 2/61 (3%)
 Frame = -2

Query: 501 SLPXLMACRCDSNTAQYERNRSFGHLVHALXRAAGGAKLPSAGLCLNA--SKAEASLAES 328
           SL   +   CD+       + S G L H + R  GG  +  + +  N+  SK E  +A S
Sbjct: 592 SLIPYLPVYCDACLNLGTHSESIGDLEHQIRRYTGGISISPSAVTNNSDVSKYELGIAIS 651

Query: 327 G 325
           G
Sbjct: 652 G 652


>SPACUNK4.14 |mdb1||BRCT domain protein|Schizosaccharomyces
           pombe|chr 1|||Manual
          Length = 520

 Score = 26.2 bits (55), Expect = 5.0
 Identities = 14/52 (26%), Positives = 24/52 (46%)
 Frame = +1

Query: 40  LSLNRSQHDAALPSTTPRQERKSSTDYSEPRHRTELYPDLRSRDARVKKKNR 195
           ++L   +  +   S    +E   ST+YS P    E  PD   + + V+ KN+
Sbjct: 230 IALKEKESTSQDESNREAEEAPISTNYSFPSSSLEDQPDKNVQSSAVENKNK 281


>SPAC22F3.03c |rdh54|tid1, mug34|ATP-dependent DNA helicase
           Rdh54|Schizosaccharomyces pombe|chr 1|||Manual
          Length = 811

 Score = 25.8 bits (54), Expect = 6.6
 Identities = 9/16 (56%), Positives = 10/16 (62%)
 Frame = -2

Query: 648 WHPSVHXDVVFDPSMS 601
           W P  H DVV DP +S
Sbjct: 187 WDPRTHVDVVIDPFLS 202


>SPAC57A7.05 |||conserved protein |Schizosaccharomyces pombe|chr
           1|||Manual
          Length = 1337

 Score = 25.8 bits (54), Expect = 6.6
 Identities = 25/82 (30%), Positives = 35/82 (42%)
 Frame = +1

Query: 25  SPGAGLSLNRSQHDAALPSTTPRQERKSSTDYSEPRHRTELYPDLRSRDARVKKKNR*HR 204
           S  +  S   SQH   L    P  E+KS  D S PR +    P   S+ + +K+K R  +
Sbjct: 134 SSSSSSSSQSSQHSTHLQFQIPSNEKKSLDDPS-PRRK----PSFFSK-SNLKRKYRYLK 187

Query: 205 SPRSKWASTSRLAF*MRNATSK 270
           +P   W     L F  +N   K
Sbjct: 188 NP-DAWNLPPSLQFIPKNLNRK 208


>SPAC2C4.14c |ppk11||PAK-related kinase Ppk11|Schizosaccharomyces
           pombe|chr 1|||Manual
          Length = 312

 Score = 25.4 bits (53), Expect = 8.8
 Identities = 12/25 (48%), Positives = 14/25 (56%)
 Frame = -3

Query: 113 VDDFRSWRGVVLGRAASCCDLLRLS 39
           VD FR W  +      SC DLL+LS
Sbjct: 72  VDGFRLWITMEYCDGGSCLDLLKLS 96


>SPBC1773.10c |||asparagine-tRNA ligase Ded81 |Schizosaccharomyces
           pombe|chr 2|||Manual
          Length = 568

 Score = 25.4 bits (53), Expect = 8.8
 Identities = 12/42 (28%), Positives = 24/42 (57%)
 Frame = -2

Query: 402 AGGAKLPSAGLCLNASKAEASLAESGKDMLTVEPRESGGSKQ 277
           A  A+  +A     A +AEA   E+ K+++  EP+++  +K+
Sbjct: 89  AAEAEAAAAARAAAAKEAEAKRLEAAKNIVLKEPKDAPAAKK 130


  Database: spombe
    Posted date:  Oct 4, 2007 10:57 AM
  Number of letters in database: 2,362,478
  Number of sequences in database:  5004
  
Lambda     K      H
   0.318    0.134    0.401 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 3,027,377
Number of Sequences: 5004
Number of extensions: 60830
Number of successful extensions: 164
Number of sequences better than 10.0: 7
Number of HSP's better than 10.0 without gapping: 158
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 164
length of database: 2,362,478
effective HSP length: 71
effective length of database: 2,007,194
effective search space used: 359287726
frameshift window, decay const: 40,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)