Last updated: 2022/11/18
BLASTX 2.2.12 [Aug-07-2005]
Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer,
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997),
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs", Nucleic Acids Res. 25:3389-3402.
Query= BmNP11_T7_I01
(793 letters)
Database: human
237,096 sequences; 76,859,062 total letters
Searching..................................................done
Score E
Sequences producing significant alignments: (bits) Value
L37368-1|AAA92859.1| 305|Homo sapiens RNA-binding protein protein. 33 0.89
BC108316-1|AAI08317.1| 305|Homo sapiens RNA binding protein S1,... 33 0.89
BC001838-1|AAH01838.1| 305|Homo sapiens RNA binding protein S1,... 33 0.89
BC001659-1|AAH01659.1| 305|Homo sapiens RNA binding protein S1,... 33 0.89
AF274003-1|AAL56665.1| 282|Homo sapiens splicing-related factor... 33 0.89
Y09703-1|CAA70874.1| 586|Homo sapiens MEMA protein. 32 2.7
Y13467-1|CAA73867.1| 1566|Homo sapiens RB18A protein protein. 31 4.8
BC131783-1|AAI31784.1| 1581|Homo sapiens mediator complex subuni... 31 4.8
AF283812-1|AAF98352.1| 1566|Homo sapiens vitamin D receptor-inte... 31 4.8
AF055994-1|AAC39854.1| 1581|Homo sapiens thyroid hormone recepto... 31 4.8
AF015608-1|AAC39791.1| 305|Homo sapiens SR protein protein. 31 6.3
>L37368-1|AAA92859.1| 305|Homo sapiens RNA-binding protein protein.
Length = 305
Score = 33.5 bits (73), Expect = 0.89
Identities = 38/123 (30%), Positives = 53/123 (43%), Gaps = 3/123 (2%)
Frame = -1
Query: 418 GTT*EPSHRSRWKLHTRPSRPNGKPSTSPKARHYGSS*SINGAFRHHKHRSPSSSNPSLA 239
G T E S + R + TR R S+S ++R SS S +G+ S SSS+ + +
Sbjct: 47 GATKESSEKDRGRDKTRKRRSASSGSSSTRSR--SSSTSSSGSSTSTGSSSGSSSSSASS 104
Query: 238 TKGSTSELTHRHSPLSFSPDLLSGSRFRPGGR---FSEAXXXXXXXXXXXXLSPASSPTN 68
GS+S T R S S S S SR R R S++ SP+ PT
Sbjct: 105 RSGSSS--TSRSSSSSSSSGSPSPSRRRHDNRRRSRSKSKPPKRDEKERKRRSPSPKPTK 162
Query: 67 VRM 59
V +
Sbjct: 163 VHI 165
>BC108316-1|AAI08317.1| 305|Homo sapiens RNA binding protein S1,
serine-rich domain protein.
Length = 305
Score = 33.5 bits (73), Expect = 0.89
Identities = 38/123 (30%), Positives = 53/123 (43%), Gaps = 3/123 (2%)
Frame = -1
Query: 418 GTT*EPSHRSRWKLHTRPSRPNGKPSTSPKARHYGSS*SINGAFRHHKHRSPSSSNPSLA 239
G T E S + R + TR R S+S ++R SS S +G+ S SSS+ + +
Sbjct: 47 GATKESSEKDRGRDKTRKRRSASSGSSSTRSR--SSSTSSSGSSTSTGSSSGSSSSSASS 104
Query: 238 TKGSTSELTHRHSPLSFSPDLLSGSRFRPGGR---FSEAXXXXXXXXXXXXLSPASSPTN 68
GS+S T R S S S S SR R R S++ SP+ PT
Sbjct: 105 RSGSSS--TSRSSSSSSSSGSPSPSRRRHDNRRRSRSKSKPPKRDEKERKRRSPSPKPTK 162
Query: 67 VRM 59
V +
Sbjct: 163 VHI 165
>BC001838-1|AAH01838.1| 305|Homo sapiens RNA binding protein S1,
serine-rich domain protein.
Length = 305
Score = 33.5 bits (73), Expect = 0.89
Identities = 38/123 (30%), Positives = 53/123 (43%), Gaps = 3/123 (2%)
Frame = -1
Query: 418 GTT*EPSHRSRWKLHTRPSRPNGKPSTSPKARHYGSS*SINGAFRHHKHRSPSSSNPSLA 239
G T E S + R + TR R S+S ++R SS S +G+ S SSS+ + +
Sbjct: 47 GATKESSEKDRGRDKTRKRRSASSGSSSTRSR--SSSTSSSGSSTSTGSSSGSSSSSASS 104
Query: 238 TKGSTSELTHRHSPLSFSPDLLSGSRFRPGGR---FSEAXXXXXXXXXXXXLSPASSPTN 68
GS+S T R S S S S SR R R S++ SP+ PT
Sbjct: 105 RSGSSS--TSRSSSSSSSSGSPSPSRRRHDNRRRSRSKSKPPKRDEKERKRRSPSPKPTK 162
Query: 67 VRM 59
V +
Sbjct: 163 VHI 165
>BC001659-1|AAH01659.1| 305|Homo sapiens RNA binding protein S1,
serine-rich domain protein.
Length = 305
Score = 33.5 bits (73), Expect = 0.89
Identities = 38/123 (30%), Positives = 53/123 (43%), Gaps = 3/123 (2%)
Frame = -1
Query: 418 GTT*EPSHRSRWKLHTRPSRPNGKPSTSPKARHYGSS*SINGAFRHHKHRSPSSSNPSLA 239
G T E S + R + TR R S+S ++R SS S +G+ S SSS+ + +
Sbjct: 47 GATKESSEKDRGRDKTRKRRSASSGSSSTRSR--SSSTSSSGSSTSTGSSSGSSSSSASS 104
Query: 238 TKGSTSELTHRHSPLSFSPDLLSGSRFRPGGR---FSEAXXXXXXXXXXXXLSPASSPTN 68
GS+S T R S S S S SR R R S++ SP+ PT
Sbjct: 105 RSGSSS--TSRSSSSSSSSGSPSPSRRRHDNRRRSRSKSKPPKRDEKERKRRSPSPKPTK 162
Query: 67 VRM 59
V +
Sbjct: 163 VHI 165
>AF274003-1|AAL56665.1| 282|Homo sapiens splicing-related factor
RNPS1 protein.
Length = 282
Score = 33.5 bits (73), Expect = 0.89
Identities = 38/123 (30%), Positives = 53/123 (43%), Gaps = 3/123 (2%)
Frame = -1
Query: 418 GTT*EPSHRSRWKLHTRPSRPNGKPSTSPKARHYGSS*SINGAFRHHKHRSPSSSNPSLA 239
G T E S + R + TR R S+S ++R SS S +G+ S SSS+ + +
Sbjct: 24 GATKESSEKDRGRDKTRKRRSASSGSSSTRSR--SSSTSSSGSSTSTGSSSGSSSSSASS 81
Query: 238 TKGSTSELTHRHSPLSFSPDLLSGSRFRPGGR---FSEAXXXXXXXXXXXXLSPASSPTN 68
GS+S T R S S S S SR R R S++ SP+ PT
Sbjct: 82 RSGSSS--TSRSSSSSSSSGSPSPSRRRHDNRRRSRSKSKPPKRDEKERKRRSPSPKPTK 139
Query: 67 VRM 59
V +
Sbjct: 140 VHI 142
>Y09703-1|CAA70874.1| 586|Homo sapiens MEMA protein.
Length = 586
Score = 31.9 bits (69), Expect = 2.7
Identities = 27/84 (32%), Positives = 38/84 (45%)
Frame = -1
Query: 394 RSRWKLHTRPSRPNGKPSTSPKARHYGSS*SINGAFRHHKHRSPSSSNPSLATKGSTSEL 215
RSR + + S+ + S+S + +S S + S SSS+ S +T GS+S
Sbjct: 428 RSRGRARNKTSKSRSRSSSSSSSSSSSTSSSSGSSSSSGSSSSRSSSSSSSSTSGSSS-- 485
Query: 214 THRHSPLSFSPDLLSGSRFRPGGR 143
R S S S S SR R GR
Sbjct: 486 --RDSSSSTSTSSSSESRSRSRGR 507
>Y13467-1|CAA73867.1| 1566|Homo sapiens RB18A protein protein.
Length = 1566
Score = 31.1 bits (67), Expect = 4.8
Identities = 18/45 (40%), Positives = 26/45 (57%)
Frame = -1
Query: 352 GKPSTSPKARHYGSS*SINGAFRHHKHRSPSSSNPSLATKGSTSE 218
GKPS+ + GS S +G+ HH H S SSS+ S + K +S+
Sbjct: 1060 GKPSSHSQYTSSGSV-SSSGSKSHHSHSSSSSSSASTSGKMKSSK 1103
>BC131783-1|AAI31784.1| 1581|Homo sapiens mediator complex subunit 1
protein.
Length = 1581
Score = 31.1 bits (67), Expect = 4.8
Identities = 18/45 (40%), Positives = 26/45 (57%)
Frame = -1
Query: 352 GKPSTSPKARHYGSS*SINGAFRHHKHRSPSSSNPSLATKGSTSE 218
GKPS+ + GS S +G+ HH H S SSS+ S + K +S+
Sbjct: 1075 GKPSSHSQYTSSGSV-SSSGSKSHHSHSSSSSSSASTSGKMKSSK 1118
>AF283812-1|AAF98352.1| 1566|Homo sapiens vitamin D
receptor-interacting protein complex component DRIP205
protein.
Length = 1566
Score = 31.1 bits (67), Expect = 4.8
Identities = 18/45 (40%), Positives = 26/45 (57%)
Frame = -1
Query: 352 GKPSTSPKARHYGSS*SINGAFRHHKHRSPSSSNPSLATKGSTSE 218
GKPS+ + GS S +G+ HH H S SSS+ S + K +S+
Sbjct: 1060 GKPSSHSQYTSSGSV-SSSGSKSHHSHSSSSSSSASTSGKMKSSK 1103
>AF055994-1|AAC39854.1| 1581|Homo sapiens thyroid hormone
receptor-associated protein complex component TRAP220
protein.
Length = 1581
Score = 31.1 bits (67), Expect = 4.8
Identities = 18/45 (40%), Positives = 26/45 (57%)
Frame = -1
Query: 352 GKPSTSPKARHYGSS*SINGAFRHHKHRSPSSSNPSLATKGSTSE 218
GKPS+ + GS S +G+ HH H S SSS+ S + K +S+
Sbjct: 1075 GKPSSHSQYTSSGSV-SSSGSKSHHSHSSSSSSSASTSGKMKSSK 1118
>AF015608-1|AAC39791.1| 305|Homo sapiens SR protein protein.
Length = 305
Score = 30.7 bits (66), Expect = 6.3
Identities = 37/123 (30%), Positives = 52/123 (42%), Gaps = 3/123 (2%)
Frame = -1
Query: 418 GTT*EPSHRSRWKLHTRPSRPNGKPSTSPKARHYGSS*SINGAFRHHKHRSPSSSNPSLA 239
G T E S + R + TR S+S ++R SS S +G+ S SSS+ + +
Sbjct: 47 GATKESSEKDRGRDKTRKRGSASSGSSSTRSR--SSSTSSSGSSTSTGSSSGSSSSSASS 104
Query: 238 TKGSTSELTHRHSPLSFSPDLLSGSRFRPGGR---FSEAXXXXXXXXXXXXLSPASSPTN 68
GS+S T R S S S S SR R R S++ SP+ PT
Sbjct: 105 RSGSSS--TSRSSSSSSSSGSPSPSRRRHDNRRRSRSKSKPPKRDEKERKRRSPSPKPTK 162
Query: 67 VRM 59
V +
Sbjct: 163 VHI 165
Database: human
Posted date: Oct 23, 2007 1:18 PM
Number of letters in database: 76,859,062
Number of sequences in database: 237,096
Lambda K H
0.318 0.134 0.401
Gapped
Lambda K H
0.279 0.0580 0.190
Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 100,187,562
Number of Sequences: 237096
Number of extensions: 2212300
Number of successful extensions: 8953
Number of sequences better than 10.0: 11
Number of HSP's better than 10.0 without gapping: 8451
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 8919
length of database: 76,859,062
effective HSP length: 89
effective length of database: 55,757,518
effective search space used: 9701808132
frameshift window, decay const: 40, 0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)
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