Bombyx BLAST Result against celegans

BLASTX 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= BmNP11_T7_H22
         (1151 letters)

Database: celegans 
           27,780 sequences; 12,740,198 total letters

Searching..................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

AL132860-21|CAB60518.2|  759|Caenorhabditis elegans Hypothetical...    32   0.67 
AF057032-1|AAC13567.1|  759|Caenorhabditis elegans DNA topoisome...    32   0.67 
U40187-5|AAS80343.1| 1437|Caenorhabditis elegans Cytokinesis def...    30   2.7  
U40187-4|AAS80342.1| 1435|Caenorhabditis elegans Cytokinesis def...    30   2.7  
AF062008-1|AAC17501.1| 1018|Caenorhabditis elegans unknown protein.    30   2.7  

>AL132860-21|CAB60518.2|  759|Caenorhabditis elegans Hypothetical
           protein Y56A3A.27 protein.
          Length = 759

 Score = 32.3 bits (70), Expect = 0.67
 Identities = 15/30 (50%), Positives = 15/30 (50%)
 Frame = +3

Query: 315 GGFFXXPGGXXGGGPXXXPPPPXIXEKXRG 404
           GG    PGG  GGGP   P PP    K RG
Sbjct: 625 GGPPRGPGGGGGGGPTGPPAPPKPPAKPRG 654


>AF057032-1|AAC13567.1|  759|Caenorhabditis elegans DNA
           topoisomerase III protein.
          Length = 759

 Score = 32.3 bits (70), Expect = 0.67
 Identities = 15/30 (50%), Positives = 15/30 (50%)
 Frame = +3

Query: 315 GGFFXXPGGXXGGGPXXXPPPPXIXEKXRG 404
           GG    PGG  GGGP   P PP    K RG
Sbjct: 625 GGPPRGPGGGGGGGPTGPPAPPKPPAKPRG 654


>U40187-5|AAS80343.1| 1437|Caenorhabditis elegans Cytokinesis defect
           protein 1, isoformb protein.
          Length = 1437

 Score = 30.3 bits (65), Expect = 2.7
 Identities = 13/29 (44%), Positives = 13/29 (44%)
 Frame = +1

Query: 295 PPQXKTXGGFXPXPGGXXGGGXKXXPPPP 381
           PP     GG  P P     GG K  PPPP
Sbjct: 759 PPPPPPPGGCPPPPPPPPPGGFKGGPPPP 787


>U40187-4|AAS80342.1| 1435|Caenorhabditis elegans Cytokinesis defect
           protein 1, isoforma protein.
          Length = 1435

 Score = 30.3 bits (65), Expect = 2.7
 Identities = 13/29 (44%), Positives = 13/29 (44%)
 Frame = +1

Query: 295 PPQXKTXGGFXPXPGGXXGGGXKXXPPPP 381
           PP     GG  P P     GG K  PPPP
Sbjct: 759 PPPPPPPGGCPPPPPPPPPGGFKGGPPPP 787


>AF062008-1|AAC17501.1| 1018|Caenorhabditis elegans unknown protein.
          Length = 1018

 Score = 30.3 bits (65), Expect = 2.7
 Identities = 13/29 (44%), Positives = 13/29 (44%)
 Frame = +1

Query: 295 PPQXKTXGGFXPXPGGXXGGGXKXXPPPP 381
           PP     GG  P P     GG K  PPPP
Sbjct: 342 PPPPPPPGGCPPPPPPPPPGGFKGGPPPP 370


  Database: celegans
    Posted date:  Oct 23, 2007  1:18 PM
  Number of letters in database: 12,740,198
  Number of sequences in database:  27,780
  
Lambda     K      H
   0.318    0.134    0.401 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 11,015,345
Number of Sequences: 27780
Number of extensions: 189583
Number of successful extensions: 607
Number of sequences better than 10.0: 5
Number of HSP's better than 10.0 without gapping: 295
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 544
length of database: 12,740,198
effective HSP length: 83
effective length of database: 10,434,458
effective search space used: 3130337400
frameshift window, decay const: 40,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)