Bombyx BLAST Result against spombe

BLASTX 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= BmNP11_T7_H19
         (750 letters)

Database: spombe 
           5004 sequences; 2,362,478 total letters

Searching..................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

SPBC28F2.06c |mdm12||Mdm10/Mdm12/Mmm1 complex subunit Mdm12|Schi...    27   2.2  
SPBC651.08c |rpc1||DNA-directed RNA polymerase III complex large...    26   6.6  
SPAC458.03 |||nuclear telomere cap complex subunit |Schizosaccha...    26   6.6  

>SPBC28F2.06c |mdm12||Mdm10/Mdm12/Mmm1 complex subunit
           Mdm12|Schizosaccharomyces pombe|chr 2|||Manual
          Length = 273

 Score = 27.5 bits (58), Expect = 2.2
 Identities = 16/49 (32%), Positives = 23/49 (46%)
 Frame = -2

Query: 236 DTVLYDNIRTVLKDKQNCSSLCIYSSFSPFLRDLPPVGRSSPCFFRLLW 90
           D   Y+N    L +++     C  ++ SP L DLPP     P F RL +
Sbjct: 61  DPQFYENEAFELANQELEGDQCSRNNVSPVLTDLPPYAAEHP-FSRLAY 108


>SPBC651.08c |rpc1||DNA-directed RNA polymerase III complex large
           subunit Rpc1|Schizosaccharomyces pombe|chr 2|||Manual
          Length = 1405

 Score = 25.8 bits (54), Expect = 6.6
 Identities = 16/60 (26%), Positives = 30/60 (50%), Gaps = 1/60 (1%)
 Frame = -2

Query: 251 STPPFDTVLYD-NIRTVLKDKQNCSSLCIYSSFSPFLRDLPPVGRSSPCFFRLLWSLRKI 75
           +T  F T  Y  +++    D+++ S++C Y   +    DLPP     P   R LW+ +++
Sbjct: 535 ATQDFITAAYLLSLKDTFLDRKSISNICCYMMDASTHIDLPPPAIIKP---RCLWTGKQV 591


>SPAC458.03 |||nuclear telomere cap complex subunit
           |Schizosaccharomyces pombe|chr 1|||Manual
          Length = 868

 Score = 25.8 bits (54), Expect = 6.6
 Identities = 12/33 (36%), Positives = 18/33 (54%)
 Frame = -2

Query: 146 LRDLPPVGRSSPCFFRLLWSLRKILIPYSSQFW 48
           L++L  +G  SPC  RL   L  +++P    FW
Sbjct: 21  LKELQHIGVPSPCNLRLYHELISVIVP---TFW 50


  Database: spombe
    Posted date:  Oct 4, 2007 10:57 AM
  Number of letters in database: 2,362,478
  Number of sequences in database:  5004
  
Lambda     K      H
   0.318    0.134    0.401 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 1,399,971
Number of Sequences: 5004
Number of extensions: 25834
Number of successful extensions: 88
Number of sequences better than 10.0: 3
Number of HSP's better than 10.0 without gapping: 86
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 88
length of database: 2,362,478
effective HSP length: 71
effective length of database: 2,007,194
effective search space used: 357280532
frameshift window, decay const: 40,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)