Bombyx BLAST Result against rice

BLASTX 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= BmNP11_T7_H19
         (750 letters)

Database: rice 
           37,544 sequences; 14,793,348 total letters

Searching..................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

12_01_0302 - 2286171-2286341,2286747-2286968                           29   3.9  
12_02_0670 - 21700523-21700932,21701266-21701390,21701476-217016...    29   5.2  
02_03_0119 - 15457691-15458687,15458768-15458934,15459019-15459123     29   5.2  
09_02_0363 - 7871730-7871853,7871986-7872075,7872720-7872799,787...    28   6.9  

>12_01_0302 - 2286171-2286341,2286747-2286968
          Length = 130

 Score = 29.1 bits (62), Expect = 3.9
 Identities = 13/34 (38%), Positives = 21/34 (61%)
 Frame = +1

Query: 85  RLQRSRKKHGEDLPTGGRSRRKGEKLE*MQREEQ 186
           RL+R RK +  D+   G  + +GEKLE  + +E+
Sbjct: 57  RLERLRKGYARDVRAAGAMKVRGEKLENWREKEK 90


>12_02_0670 -
           21700523-21700932,21701266-21701390,21701476-21701651,
           21702937-21703128
          Length = 300

 Score = 28.7 bits (61), Expect = 5.2
 Identities = 14/49 (28%), Positives = 26/49 (53%), Gaps = 2/49 (4%)
 Frame = -2

Query: 266 PSCYFSTP--PFDTVLYDNIRTVLKDKQNCSSLCIYSSFSPFLRDLPPV 126
           PSC  S    P + +  + +   L  K+ C+++  Y+S+ PF + + PV
Sbjct: 51  PSCRASAERCPAEEINGEELVKELSGKEECTAVLFYASWCPFSQRMRPV 99


>02_03_0119 - 15457691-15458687,15458768-15458934,15459019-15459123
          Length = 422

 Score = 28.7 bits (61), Expect = 5.2
 Identities = 18/69 (26%), Positives = 32/69 (46%)
 Frame = -3

Query: 328 LIRNWPSRFLLS*APESTSSIPLATFQLLPSIPYCTTTSGRFLRTNKTALLSASIQASLP 149
           + R  P +FL+   P S  S   +  +LLPS P+  +  G+       A +S + + +  
Sbjct: 275 IARQTPHKFLVKSPPSSLGSKLKSHGKLLPSRPFTVSPPGKVQVAAAAASVSKTRRCTFS 334

Query: 148 SSEIYRQLV 122
            S +  +LV
Sbjct: 335 PSRLVSRLV 343


>09_02_0363 -
           7871730-7871853,7871986-7872075,7872720-7872799,
           7872881-7872964,7874944-7874992,7875114-7875240,
           7875798-7875934,7876004-7876050,7876126-7876185,
           7876810-7876862,7878205-7878269,7879050-7879174,
           7879307-7879366,7879670-7879806,7880737-7880805,
           7880889-7881045,7881121-7881235,7881855-7881916
          Length = 546

 Score = 28.3 bits (60), Expect = 6.9
 Identities = 12/43 (27%), Positives = 22/43 (51%)
 Frame = -3

Query: 238 SIPYCTTTSGRFLRTNKTALLSASIQASLPSSEIYRQLVDPRH 110
           S P+C    G F  + +   ++ S++     +E+  + VDPRH
Sbjct: 269 SCPFCLVPCGSFKISEECQAVNVSLKTDSWRTELLAEGVDPRH 311


  Database: rice
    Posted date:  Oct 4, 2007 10:57 AM
  Number of letters in database: 14,793,348
  Number of sequences in database:  37,544
  
Lambda     K      H
   0.318    0.134    0.401 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 9,846,578
Number of Sequences: 37544
Number of extensions: 183236
Number of successful extensions: 440
Number of sequences better than 10.0: 4
Number of HSP's better than 10.0 without gapping: 435
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 440
length of database: 14,793,348
effective HSP length: 80
effective length of database: 11,789,828
effective search space used: 1992480932
frameshift window, decay const: 40,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)