Bombyx BLAST Result against spombe

BLASTX 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= BmNP11_T7_H17
         (871 letters)

Database: spombe 
           5004 sequences; 2,362,478 total letters

Searching..................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

SPAC4F8.12c |spp42|cwf6|U5 snRNP complex subunit Spp42|Schizosac...    25   0.19 
SPCC895.05 |for3||formin For3|Schizosaccharomyces pombe|chr 3|||...    29   0.86 
SPBC660.06 |||conserved fungal protein|Schizosaccharomyces pombe...    26   8.0  

>SPAC4F8.12c |spp42|cwf6|U5 snRNP complex subunit
           Spp42|Schizosaccharomyces pombe|chr 1|||Manual
          Length = 2363

 Score = 25.0 bits (52), Expect(2) = 0.19
 Identities = 10/22 (45%), Positives = 11/22 (50%)
 Frame = -2

Query: 477 PPPPPXPGXXF*KKKKXXXXGG 412
           PPPPP PG    +K K     G
Sbjct: 24  PPPPPPPGYVKKRKNKTPAQSG 45



 Score = 24.6 bits (51), Expect(2) = 0.19
 Identities = 8/11 (72%), Positives = 8/11 (72%)
 Frame = -2

Query: 486 GXXPPPPPXPG 454
           G  PPPPP PG
Sbjct: 7   GNPPPPPPPPG 17



 Score = 22.6 bits (46), Expect(2) = 3.1
 Identities = 7/9 (77%), Positives = 7/9 (77%)
 Frame = +3

Query: 501 GXXPPPPPP 527
           G  PPPPPP
Sbjct: 7   GNPPPPPPP 15



 Score = 22.6 bits (46), Expect(2) = 3.1
 Identities = 7/9 (77%), Positives = 7/9 (77%)
 Frame = +3

Query: 510 PPPPPPXXG 536
           PPPPPP  G
Sbjct: 9   PPPPPPPPG 17


>SPCC895.05 |for3||formin For3|Schizosaccharomyces pombe|chr
           3|||Manual
          Length = 1461

 Score = 29.1 bits (62), Expect = 0.86
 Identities = 17/39 (43%), Positives = 17/39 (43%)
 Frame = -2

Query: 486 GXXPPPPPXPGXXF*KKKKXXXXGGGXXPPPFXLXPPPP 370
           G  PPPPP PG            G G  PPP    PPPP
Sbjct: 759 GGPPPPPPPPG----------VAGAGPPPPP----PPPP 783


>SPBC660.06 |||conserved fungal protein|Schizosaccharomyces
           pombe|chr 2|||Manual
          Length = 273

 Score = 25.8 bits (54), Expect = 8.0
 Identities = 14/33 (42%), Positives = 14/33 (42%)
 Frame = +3

Query: 456 RGXGGGGGXAXXXXXGXXPPPPPPXXGGGXGXG 554
           RG  GGG        G  PPP P   GG  G G
Sbjct: 183 RGHNGGGFGGFGGGSG-GPPPGPGGFGGFGGFG 214


  Database: spombe
    Posted date:  Oct 4, 2007 10:57 AM
  Number of letters in database: 2,362,478
  Number of sequences in database:  5004
  
Lambda     K      H
   0.318    0.134    0.401 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 1,757,426
Number of Sequences: 5004
Number of extensions: 24004
Number of successful extensions: 109
Number of sequences better than 10.0: 3
Number of HSP's better than 10.0 without gapping: 28
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 88
length of database: 2,362,478
effective HSP length: 72
effective length of database: 2,002,190
effective search space used: 434475230
frameshift window, decay const: 40,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)