Bombyx BLAST Result against rice

BLASTX 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= BmNP11_T7_H16
         (720 letters)

Database: rice 
           37,544 sequences; 14,793,348 total letters

Searching..................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

10_01_0280 - 2945929-2946437,2946541-2946649                           29   2.8  
10_01_0279 - 2938189-2938697,2938800-2938965                           29   2.8  
10_01_0277 - 2929266-2929686,2929735-2929774,2929885-2930050           29   2.8  
04_04_0176 - 23329589-23331043                                         28   8.6  

>10_01_0280 - 2945929-2946437,2946541-2946649
          Length = 205

 Score = 29.5 bits (63), Expect = 2.8
 Identities = 16/37 (43%), Positives = 17/37 (45%), Gaps = 1/37 (2%)
 Frame = -3

Query: 424 PLFFFF*KKXXXXXPPPXXK-TPPPXXGXGGXKKXGG 317
           P F +F KK     P P  K TP P  G GG    GG
Sbjct: 148 PFFDYFHKKPQGPEPKPDPKPTPLPANGGGGGAGNGG 184


>10_01_0279 - 2938189-2938697,2938800-2938965
          Length = 224

 Score = 29.5 bits (63), Expect = 2.8
 Identities = 16/37 (43%), Positives = 17/37 (45%), Gaps = 1/37 (2%)
 Frame = -3

Query: 424 PLFFFF*KKXXXXXPPPXXK-TPPPXXGXGGXKKXGG 317
           P F +F KK     P P  K TP P  G GG    GG
Sbjct: 167 PFFDYFHKKPQGPEPKPDPKPTPLPANGGGGGAGNGG 203


>10_01_0277 - 2929266-2929686,2929735-2929774,2929885-2930050
          Length = 208

 Score = 29.5 bits (63), Expect = 2.8
 Identities = 16/37 (43%), Positives = 17/37 (45%), Gaps = 1/37 (2%)
 Frame = -3

Query: 424 PLFFFF*KKXXXXXPPPXXK-TPPPXXGXGGXKKXGG 317
           P F +F KK     P P  K TP P  G GG    GG
Sbjct: 151 PFFDYFHKKPQGPEPKPDPKPTPLPANGGGGGAGNGG 187


>04_04_0176 - 23329589-23331043
          Length = 484

 Score = 27.9 bits (59), Expect = 8.6
 Identities = 12/24 (50%), Positives = 13/24 (54%), Gaps = 1/24 (4%)
 Frame = +2

Query: 314 NPPXFFXPP-PXXPXGGGFXXGGG 382
           +PP    PP P  P GGG   GGG
Sbjct: 253 DPPALAPPPRPQLPFGGGMLGGGG 276


  Database: rice
    Posted date:  Oct 4, 2007 10:57 AM
  Number of letters in database: 14,793,348
  Number of sequences in database:  37,544
  
Lambda     K      H
   0.318    0.134    0.401 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 16,345,587
Number of Sequences: 37544
Number of extensions: 342497
Number of successful extensions: 3553
Number of sequences better than 10.0: 4
Number of HSP's better than 10.0 without gapping: 1465
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 2839
length of database: 14,793,348
effective HSP length: 80
effective length of database: 11,789,828
effective search space used: 1874582652
frameshift window, decay const: 40,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)