Bombyx BLAST Result against spombe

BLASTX 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= BmNP11_T7_H12
         (990 letters)

Database: spombe 
           5004 sequences; 2,362,478 total letters

Searching..................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

SPAC4F8.12c |spp42|cwf6|U5 snRNP complex subunit Spp42|Schizosac...    24   1.3  
SPBC13E7.03c |||RNA hairpin binding protein |Schizosaccharomyces...    24   3.1  
SPAC4F10.15c |wsp1||WASp homolog|Schizosaccharomyces pombe|chr 1...    27   4.1  
SPAC1F5.04c |cdc12||formin Cdc12|Schizosaccharomyces pombe|chr 1...    24   4.8  
SPBC146.13c |myo1||myosin type I|Schizosaccharomyces pombe|chr 2...    24   5.0  
SPCC306.09c |cap1|cap|adenylyl cyclase-associated protein Cap1|S...    24   5.4  

>SPAC4F8.12c |spp42|cwf6|U5 snRNP complex subunit
           Spp42|Schizosaccharomyces pombe|chr 1|||Manual
          Length = 2363

 Score = 23.8 bits (49), Expect(2) = 1.3
 Identities = 7/7 (100%), Positives = 7/7 (100%)
 Frame = -1

Query: 990 PPPPPPP 970
           PPPPPPP
Sbjct: 9   PPPPPPP 15



 Score = 23.8 bits (49), Expect(2) = 1.3
 Identities = 7/7 (100%), Positives = 7/7 (100%)
 Frame = -1

Query: 990 PPPPPPP 970
           PPPPPPP
Sbjct: 10  PPPPPPP 16



 Score = 23.0 bits (47), Expect(2) = 1.3
 Identities = 7/8 (87%), Positives = 7/8 (87%)
 Frame = -1

Query: 891 PPPPPPXF 868
           PPPPPP F
Sbjct: 11  PPPPPPGF 18



 Score = 23.0 bits (47), Expect(2) = 1.3
 Identities = 8/16 (50%), Positives = 9/16 (56%)
 Frame = -1

Query: 891 PPPPPPXFFXXXXKKK 844
           PPPPPP  +    K K
Sbjct: 24  PPPPPPPGYVKKRKNK 39


>SPBC13E7.03c |||RNA hairpin binding protein |Schizosaccharomyces
           pombe|chr 2|||Manual
          Length = 713

 Score = 23.8 bits (49), Expect(2) = 3.1
 Identities = 7/7 (100%), Positives = 7/7 (100%)
 Frame = -1

Query: 990 PPPPPPP 970
           PPPPPPP
Sbjct: 371 PPPPPPP 377



 Score = 21.8 bits (44), Expect(2) = 3.1
 Identities = 7/16 (43%), Positives = 8/16 (50%)
 Frame = -1

Query: 891 PPPPPPXFFXXXXKKK 844
           PPPPPP       K +
Sbjct: 372 PPPPPPELLNHSPKSR 387


>SPAC4F10.15c |wsp1||WASp homolog|Schizosaccharomyces pombe|chr
           1|||Manual
          Length = 574

 Score = 27.1 bits (57), Expect = 4.1
 Identities = 14/39 (35%), Positives = 14/39 (35%)
 Frame = -1

Query: 990 PPPPPPPXXXXXXXXXXXXXXGGGXXXXXXXXXPPPPPP 874
           PPPPPPP                G         PPPPPP
Sbjct: 311 PPPPPPPSRRNRGKPPI------GNGSSNSSLPPPPPPP 343


>SPAC1F5.04c |cdc12||formin Cdc12|Schizosaccharomyces pombe|chr
           1|||Manual
          Length = 1841

 Score = 23.8 bits (49), Expect(2) = 4.8
 Identities = 7/7 (100%), Positives = 7/7 (100%)
 Frame = -1

Query: 990 PPPPPPP 970
           PPPPPPP
Sbjct: 945 PPPPPPP 951



 Score = 21.0 bits (42), Expect(2) = 4.8
 Identities = 6/6 (100%), Positives = 6/6 (100%)
 Frame = -1

Query: 891 PPPPPP 874
           PPPPPP
Sbjct: 948 PPPPPP 953


>SPBC146.13c |myo1||myosin type I|Schizosaccharomyces pombe|chr
            2|||Manual
          Length = 1217

 Score = 23.8 bits (49), Expect(2) = 5.0
 Identities = 7/7 (100%), Positives = 7/7 (100%)
 Frame = -1

Query: 990  PPPPPPP 970
            PPPPPPP
Sbjct: 1095 PPPPPPP 1101



 Score = 21.0 bits (42), Expect(2) = 5.0
 Identities = 6/6 (100%), Positives = 6/6 (100%)
 Frame = -1

Query: 891  PPPPPP 874
            PPPPPP
Sbjct: 1097 PPPPPP 1102


>SPCC306.09c |cap1|cap|adenylyl cyclase-associated protein
           Cap1|Schizosaccharomyces pombe|chr 3|||Manual
          Length = 551

 Score = 23.8 bits (49), Expect(2) = 5.4
 Identities = 7/7 (100%), Positives = 7/7 (100%)
 Frame = -1

Query: 990 PPPPPPP 970
           PPPPPPP
Sbjct: 307 PPPPPPP 313



 Score = 21.0 bits (42), Expect(2) = 5.4
 Identities = 6/6 (100%), Positives = 6/6 (100%)
 Frame = -1

Query: 891 PPPPPP 874
           PPPPPP
Sbjct: 309 PPPPPP 314


  Database: spombe
    Posted date:  Oct 4, 2007 10:57 AM
  Number of letters in database: 2,362,478
  Number of sequences in database:  5004
  
Lambda     K      H
   0.318    0.134    0.401 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 2,070,301
Number of Sequences: 5004
Number of extensions: 27482
Number of successful extensions: 285
Number of sequences better than 10.0: 7
Number of HSP's better than 10.0 without gapping: 31
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 107
length of database: 2,362,478
effective HSP length: 73
effective length of database: 1,997,186
effective search space used: 511279616
frameshift window, decay const: 40,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)