Bombyx BLAST Result against spombe

BLASTX 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= BmNP11_T7_H10
         (831 letters)

Database: spombe 
           5004 sequences; 2,362,478 total letters

Searching..................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

SPBC685.06 |rps001|rps0-1, rpsa-1, rps0|40S ribosomal protein S0...   134   1e-32
SPAPJ698.02c |rps002|rpsa-2, rps0-2, rps0|40S ribosomal protein ...   132   8e-32
SPAC24C9.10c |mrp4||mitochondrial ribosomal protein subunit S2|S...    39   8e-04
SPAC6G10.10c |||human hmmtag2 homolog|Schizosaccharomyces pombe|...    28   1.4  
SPAC27E2.06c |||methionine-tRNA ligase, mitochondrial|Schizosacc...    28   1.4  
SPCC1840.08c |||protein disulfide isomerase |Schizosaccharomyces...    26   5.7  
SPAC1952.06c |||DUF1716 family protein|Schizosaccharomyces pombe...    26   7.5  
SPBC800.04c |rpl4301|rpl43-1, rpl43, rpl37a-1|60S ribosomal prot...    25   10.0 
SPAC1F5.11c |||phosphatidylinositol kinase |Schizosaccharomyces ...    25   10.0 

>SPBC685.06 |rps001|rps0-1, rpsa-1, rps0|40S ribosomal protein S0A
           |Schizosaccharomyces pombe|chr 2|||Manual
          Length = 292

 Score =  134 bits (325), Expect = 1e-32
 Identities = 63/99 (63%), Positives = 75/99 (75%)
 Frame = -1

Query: 618 RFLIVLDPAQDHQPITEASYVNIPVIALCNTDSPLRFVDIAIPCNTKSSHSIGLMWWLLA 439
           R ++V DP  D Q I EAS+VNIPVIALC+TDS L  VDIAIP N K   SIGL+W+LLA
Sbjct: 122 RLIVVTDPRADAQAIKEASFVNIPVIALCDTDSILNHVDIAIPTNNKGRKSIGLIWYLLA 181

Query: 438 REVLRLRGVLPRDQRWDVVVDLFFYRDPEESEKDEQQAK 322
           REVLR+RG L R   WDV+ DL+FYRDPEE E++E+  K
Sbjct: 182 REVLRVRGTLSRSAPWDVMPDLYFYRDPEEVEREEEAKK 220



 Score = 61.3 bits (142), Expect = 2e-10
 Identities = 34/77 (44%), Positives = 40/77 (51%), Gaps = 1/77 (1%)
 Frame = -3

Query: 823 LGCTWXXXXCXSXXX-THRXPR*CFVIXSRPFGQRAVLKFXAHTGATXIAXRFTPGAFXN 647
           LG TW      +    T   P    V+ +R +G RAVLKF AHTGAT IA RFTPG F N
Sbjct: 53  LGKTWEKLVLAARVIATIENPADVCVVSTRTYGHRAVLKFAAHTGATAIAGRFTPGNFTN 112

Query: 646 QIQAAFCEPSFLDCIGP 596
            I   + EP  +    P
Sbjct: 113 YITRTYREPRLIVVTDP 129


>SPAPJ698.02c |rps002|rpsa-2, rps0-2, rps0|40S ribosomal protein
           S0B|Schizosaccharomyces pombe|chr 1|||Manual
          Length = 287

 Score =  132 bits (318), Expect = 8e-32
 Identities = 62/97 (63%), Positives = 74/97 (76%)
 Frame = -1

Query: 618 RFLIVLDPAQDHQPITEASYVNIPVIALCNTDSPLRFVDIAIPCNTKSSHSIGLMWWLLA 439
           R +IV DP  D Q I EAS+VNIPVIALC+TDS L  VD+AIP N K   SIGL W+LLA
Sbjct: 123 RLIIVTDPRADAQAIKEASFVNIPVIALCDTDSILNHVDVAIPINNKGYKSIGLAWYLLA 182

Query: 438 REVLRLRGVLPRDQRWDVVVDLFFYRDPEESEKDEQQ 328
           REVLRLRG + R   W+V+ DL+FYRDPEE E++E+Q
Sbjct: 183 REVLRLRGNISRTTAWEVMPDLYFYRDPEEIEREEEQ 219



 Score = 66.1 bits (154), Expect = 6e-12
 Identities = 37/77 (48%), Positives = 41/77 (53%), Gaps = 1/77 (1%)
 Frame = -3

Query: 823 LGCTWXXXXCXSXXX-THRXPR*CFVIXSRPFGQRAVLKFXAHTGATXIAXRFTPGAFXN 647
           LG TW      +    T   P    VI SRP+G RAVLKF AHTGAT IA RFTPG F N
Sbjct: 54  LGKTWEKLVLAARVIATIENPADVCVISSRPYGHRAVLKFAAHTGATAIAGRFTPGNFTN 113

Query: 646 QIQAAFCEPSFLDCIGP 596
            I   + EP  +    P
Sbjct: 114 YITRTYREPRLIIVTDP 130


>SPAC24C9.10c |mrp4||mitochondrial ribosomal protein subunit
           S2|Schizosaccharomyces pombe|chr 1|||Manual
          Length = 263

 Score = 39.1 bits (87), Expect = 8e-04
 Identities = 22/74 (29%), Positives = 36/74 (48%)
 Frame = -1

Query: 657 LLXTRSKLHSVNLRFLIVLDPAQDHQPITEASYVNIPVIALCNTDSPLRFVDIAIPCNTK 478
           L+ T  K   V    +++L+P ++     EA   ++P I + +TD+  R V   IP N  
Sbjct: 168 LIQTDKKPSYVFPDLMVILNPLENKSACLEAQKTHVPTIGIIDTDADPRMVTYPIPANDD 227

Query: 477 SSHSIGLMWWLLAR 436
           S     L+  LL+R
Sbjct: 228 SLRCTDLIAGLLSR 241


>SPAC6G10.10c |||human hmmtag2 homolog|Schizosaccharomyces pombe|chr
           1|||Manual
          Length = 194

 Score = 28.3 bits (60), Expect = 1.4
 Identities = 17/36 (47%), Positives = 22/36 (61%), Gaps = 3/36 (8%)
 Frame = +2

Query: 371 NKSTTTSQRWSRG---STPRSLSTSRANNHHIKPIE 469
           N+S+T +++ SR    ST RS STS AN H  K  E
Sbjct: 106 NRSSTNTEKDSRSIAHSTSRSRSTSPANRHRRKEKE 141


>SPAC27E2.06c |||methionine-tRNA ligase,
           mitochondrial|Schizosaccharomyces pombe|chr 1|||Manual
          Length = 539

 Score = 28.3 bits (60), Expect = 1.4
 Identities = 14/37 (37%), Positives = 21/37 (56%)
 Frame = -1

Query: 573 TEASYVNIPVIALCNTDSPLRFVDIAIPCNTKSSHSI 463
           T A    +  + LC+ +S  RF D+A+  NTK +H I
Sbjct: 75  TVAQTEGVSPLQLCDRNSK-RFADLAVAANTKFTHFI 110


>SPCC1840.08c |||protein disulfide isomerase |Schizosaccharomyces
           pombe|chr 3|||Manual
          Length = 561

 Score = 26.2 bits (55), Expect = 5.7
 Identities = 12/26 (46%), Positives = 16/26 (61%)
 Frame = -1

Query: 465 IGLMWWLLAREVLRLRGVLPRDQRWD 388
           IGL W L  REV R + +  R++ WD
Sbjct: 365 IGLKWTLKLREVERKQLLTAREKWWD 390


>SPAC1952.06c |||DUF1716 family protein|Schizosaccharomyces
           pombe|chr 1|||Manual
          Length = 564

 Score = 25.8 bits (54), Expect = 7.5
 Identities = 12/27 (44%), Positives = 17/27 (62%), Gaps = 2/27 (7%)
 Frame = -2

Query: 410 FPVTSAGML--WLICSSTVTLKKVKRM 336
           FP  S  ++  WL   +TVTLKK+K +
Sbjct: 480 FPFQSTVLILSWLCVENTVTLKKIKML 506


>SPBC800.04c |rpl4301|rpl43-1, rpl43, rpl37a-1|60S ribosomal protein
           L37a|Schizosaccharomyces pombe|chr 2|||Manual
          Length = 94

 Score = 25.4 bits (53), Expect = 10.0
 Identities = 8/14 (57%), Positives = 10/14 (71%)
 Frame = +3

Query: 480 WCCMG*QCPQILAG 521
           WCC G  C ++LAG
Sbjct: 55  WCCNGKGCKKVLAG 68


>SPAC1F5.11c |||phosphatidylinositol kinase |Schizosaccharomyces
           pombe|chr 1|||Manual
          Length = 3655

 Score = 25.4 bits (53), Expect = 10.0
 Identities = 17/48 (35%), Positives = 27/48 (56%), Gaps = 1/48 (2%)
 Frame = -2

Query: 599 TLHKTINPLLKLHMSTFL*LLCATQTPR-*DLWTLLSHATPSLPTLLV 459
           +L+K + PLL   +  F  LL + +TP+  DL+T L    P   +LL+
Sbjct: 735 SLYKEVMPLLHALLEAFNSLLISARTPKEKDLFTELCLTIPVRLSLLL 782


  Database: spombe
    Posted date:  Oct 4, 2007 10:57 AM
  Number of letters in database: 2,362,478
  Number of sequences in database:  5004
  
Lambda     K      H
   0.318    0.134    0.401 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 2,910,457
Number of Sequences: 5004
Number of extensions: 53877
Number of successful extensions: 136
Number of sequences better than 10.0: 9
Number of HSP's better than 10.0 without gapping: 133
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 136
length of database: 2,362,478
effective HSP length: 72
effective length of database: 2,002,190
effective search space used: 408446760
frameshift window, decay const: 40,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)