Last updated: 2022/11/18
BLASTX 2.2.12 [Aug-07-2005]
Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer,
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997),
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs", Nucleic Acids Res. 25:3389-3402.
Query= BmNP11_T7_H09
(1076 letters)
Database: rice
37,544 sequences; 14,793,348 total letters
Searching..................................................done
Score E
Sequences producing significant alignments: (bits) Value
02_04_0180 + 20696258-20698398,20698691-20698871,20698998-20699060 31 2.1
03_03_0038 + 13984525-13984917,13985351-13985429,13985535-139856... 25 2.1
09_02_0327 - 7284829-7284889,7284946-7286126 25 2.6
12_02_0299 - 17051570-17052474,17053542-17053755 25 2.6
06_02_0257 - 13533689-13533714,13533799-13533925,13534013-135341... 30 3.6
02_04_0018 - 18943015-18943734 30 3.6
04_03_0212 + 12697854-12698549,12698655-12698930,12698991-126990... 29 4.8
07_01_0080 + 587674-588510 29 6.4
11_06_0499 + 24354810-24355212,24355677-24355735,24355846-243559... 29 8.4
07_01_0439 + 3333654-3334217 29 8.4
>02_04_0180 + 20696258-20698398,20698691-20698871,20698998-20699060
Length = 794
Score = 30.7 bits (66), Expect = 2.1
Identities = 13/37 (35%), Positives = 17/37 (45%), Gaps = 4/37 (10%)
Frame = -1
Query: 764 PPP----GGGGXFXXXXXXXXXPPPPPPPXXXXKKNF 666
PPP GGG + PPPPPPP ++ +
Sbjct: 16 PPPFGRGGGGAGYPRGHKQLYAPPPPPPPQHQQQRRY 52
>03_03_0038 +
13984525-13984917,13985351-13985429,13985535-13985628,
13985712-13985844
Length = 232
Score = 25.0 bits (52), Expect(2) = 2.1
Identities = 10/22 (45%), Positives = 10/22 (45%)
Frame = -1
Query: 755 GGGGXFXXXXXXXXXPPPPPPP 690
GGG PPPPPPP
Sbjct: 23 GGGRRKKAGRRGEAKPPPPPPP 44
Score = 24.2 bits (50), Expect(2) = 2.1
Identities = 8/12 (66%), Positives = 8/12 (66%)
Frame = -1
Query: 710 PPPPPPPXXXXK 675
PPPPPPP K
Sbjct: 80 PPPPPPPPKQEK 91
>09_02_0327 - 7284829-7284889,7284946-7286126
Length = 413
Score = 24.6 bits (51), Expect(2) = 2.6
Identities = 9/25 (36%), Positives = 10/25 (40%)
Frame = -1
Query: 764 PPPGGGGXFXXXXXXXXXPPPPPPP 690
P P + PPPPPPP
Sbjct: 35 PCPSPASSYKERIIFGAHPPPPPPP 59
Score = 24.2 bits (50), Expect(2) = 2.6
Identities = 7/15 (46%), Positives = 10/15 (66%)
Frame = -1
Query: 710 PPPPPPPXXXXKKNF 666
PPPPPPP ++ +
Sbjct: 59 PPPPPPPPPRGRRYY 73
>12_02_0299 - 17051570-17052474,17053542-17053755
Length = 372
Score = 24.6 bits (51), Expect(2) = 2.6
Identities = 10/25 (40%), Positives = 10/25 (40%)
Frame = -1
Query: 764 PPPGGGGXFXXXXXXXXXPPPPPPP 690
PPP PPPPPPP
Sbjct: 271 PPPAFPFPHLPPIFSPPSPPPPPPP 295
Score = 24.2 bits (50), Expect(2) = 2.6
Identities = 8/15 (53%), Positives = 9/15 (60%)
Frame = -1
Query: 710 PPPPPPPXXXXKKNF 666
PPPPPPP +F
Sbjct: 320 PPPPPPPPPPPPPSF 334
>06_02_0257 -
13533689-13533714,13533799-13533925,13534013-13534121,
13534193-13534272,13534758-13534979,13536070-13536318,
13537032-13537484,13539834-13540556
Length = 662
Score = 29.9 bits (64), Expect = 3.6
Identities = 14/29 (48%), Positives = 14/29 (48%), Gaps = 4/29 (13%)
Frame = -1
Query: 764 PPPGGG----GXFXXXXXXXXXPPPPPPP 690
PP GGG G F PPPPPPP
Sbjct: 43 PPGGGGGDRRGGFQLPPDAAPPPPPPPPP 71
>02_04_0018 - 18943015-18943734
Length = 239
Score = 29.9 bits (64), Expect = 3.6
Identities = 12/38 (31%), Positives = 19/38 (50%)
Frame = -2
Query: 484 FFFFXXNPPXPPXPXKRAXQKKKTPPXXXGGGGXEXNF 371
F+FF + P P +R Q+++ GGGG E +
Sbjct: 3 FYFFSSSAPAPEKKTRRQQQQQQQREQEGGGGGNEARY 40
>04_03_0212 +
12697854-12698549,12698655-12698930,12698991-12699038,
12699659-12699715,12700965-12701163,12702267-12702373,
12702586-12702759,12702844-12703083,12703638-12703693,
12704499-12704622
Length = 658
Score = 29.5 bits (63), Expect = 4.8
Identities = 12/25 (48%), Positives = 12/25 (48%)
Frame = +1
Query: 691 GGGGGGGXXXXXXXXXKXPPPPGGG 765
GGGGGGG PP PG G
Sbjct: 58 GGGGGGGGGGWWRQGGSGPPDPGDG 82
>07_01_0080 + 587674-588510
Length = 278
Score = 29.1 bits (62), Expect = 6.4
Identities = 11/25 (44%), Positives = 11/25 (44%)
Frame = -1
Query: 764 PPPGGGGXFXXXXXXXXXPPPPPPP 690
PPP G PPPPPPP
Sbjct: 97 PPPSSGSPPPPPPPPPPPPPPPPPP 121
Score = 28.7 bits (61), Expect = 8.4
Identities = 11/32 (34%), Positives = 14/32 (43%)
Frame = -1
Query: 764 PPPGGGGXFXXXXXXXXXPPPPPPPXXXXKKN 669
PPP G PPPPPPP +++
Sbjct: 96 PPPPSSGSPPPPPPPPPPPPPPPPPPLFTRRS 127
>11_06_0499 +
24354810-24355212,24355677-24355735,24355846-24355929,
24356040-24356337,24357026-24357203,24357686-24357746,
24358209-24358391,24358581-24358742,24358844-24359037,
24359354-24359504,24359551-24359578,24359845-24360117,
24360660-24360724
Length = 712
Score = 28.7 bits (61), Expect = 8.4
Identities = 12/33 (36%), Positives = 15/33 (45%)
Frame = -2
Query: 478 FFXXNPPXPPXPXKRAXQKKKTPPXXXGGGGXE 380
F +PP PP P R ++ GGGG E
Sbjct: 42 FLVSSPPPPPAPRARLARRAAAGGLYGGGGGEE 74
>07_01_0439 + 3333654-3334217
Length = 187
Score = 28.7 bits (61), Expect = 8.4
Identities = 11/27 (40%), Positives = 14/27 (51%)
Frame = -2
Query: 466 NPPXPPXPXKRAXQKKKTPPXXXGGGG 386
+PP PP P R +K + GGGG
Sbjct: 34 SPPPPPPPASRPPKKPRVVASGGGGGG 60
Database: rice
Posted date: Oct 4, 2007 10:57 AM
Number of letters in database: 14,793,348
Number of sequences in database: 37,544
Lambda K H
0.318 0.134 0.401
Gapped
Lambda K H
0.279 0.0580 0.190
Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 20,489,175
Number of Sequences: 37544
Number of extensions: 488307
Number of successful extensions: 13686
Number of sequences better than 10.0: 10
Number of HSP's better than 10.0 without gapping: 2723
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 7543
length of database: 14,793,348
effective HSP length: 83
effective length of database: 11,677,196
effective search space used: 3211228900
frameshift window, decay const: 40, 0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)
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