Last updated: 2022/11/18
BLASTX 2.2.12 [Aug-07-2005]
Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer,
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997),
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs", Nucleic Acids Res. 25:3389-3402.
Query= BmNP11_T7_H09
(1076 letters)
Database: celegans
27,780 sequences; 12,740,198 total letters
Searching..................................................done
Score E
Sequences producing significant alignments: (bits) Value
Z66565-6|CAA91483.1| 165|Caenorhabditis elegans Hypothetical pr... 30 3.3
AL117204-20|CAB55136.2| 699|Caenorhabditis elegans Hypothetical... 30 3.3
AJ243905-1|CAB64866.1| 699|Caenorhabditis elegans SF1 protein p... 30 3.3
Z68301-5|CAA92620.1| 301|Caenorhabditis elegans Hypothetical pr... 29 5.7
V00148-1|CAA23464.1| 301|Caenorhabditis elegans protein ( Caeno... 29 5.7
J01048-1|AAA27990.1| 301|Caenorhabditis elegans protein ( C.ele... 29 5.7
AY347575-1|AAP97869.1| 301|Caenorhabditis elegans COLlagen stru... 29 5.7
AC024809-7|AAF59540.1| 315|Caenorhabditis elegans Hypothetical ... 29 5.7
Z12018-1|CAD88219.2| 774|Caenorhabditis elegans Hypothetical pr... 29 7.6
Z11126-8|CAD88221.2| 774|Caenorhabditis elegans Hypothetical pr... 29 7.6
U40187-5|AAS80343.1| 1437|Caenorhabditis elegans Cytokinesis def... 29 7.6
U40187-4|AAS80342.1| 1435|Caenorhabditis elegans Cytokinesis def... 29 7.6
AF062008-1|AAC17501.1| 1018|Caenorhabditis elegans unknown protein. 29 7.6
AF535160-1|AAN33048.1| 468|Caenorhabditis elegans UNC-34 protein. 24 8.5
AC025722-5|AAO12397.1| 454|Caenorhabditis elegans Uncoordinated... 24 8.5
AC025722-6|AAO12398.1| 310|Caenorhabditis elegans Uncoordinated... 24 8.8
AF068713-14|AAK73895.1| 172|Caenorhabditis elegans Ground-like ... 28 10.0
AC024798-8|AAK29921.3| 1115|Caenorhabditis elegans Hypothetical ... 28 10.0
>Z66565-6|CAA91483.1| 165|Caenorhabditis elegans Hypothetical
protein T04F8.8 protein.
Length = 165
Score = 29.9 bits (64), Expect = 3.3
Identities = 12/24 (50%), Positives = 12/24 (50%)
Frame = -1
Query: 761 PPGGGGXFXXXXXXXXXPPPPPPP 690
P GGGG PPPPPPP
Sbjct: 80 PYGGGGGGGYGRPQGYVPPPPPPP 103
>AL117204-20|CAB55136.2| 699|Caenorhabditis elegans Hypothetical
protein Y116A8C.32 protein.
Length = 699
Score = 29.9 bits (64), Expect = 3.3
Identities = 14/25 (56%), Positives = 14/25 (56%)
Frame = -1
Query: 764 PPPGGGGXFXXXXXXXXXPPPPPPP 690
PPPGG G F PPPPPPP
Sbjct: 664 PPPGGLGGFMP-------PPPPPPP 681
>AJ243905-1|CAB64866.1| 699|Caenorhabditis elegans SF1 protein
protein.
Length = 699
Score = 29.9 bits (64), Expect = 3.3
Identities = 14/25 (56%), Positives = 14/25 (56%)
Frame = -1
Query: 764 PPPGGGGXFXXXXXXXXXPPPPPPP 690
PPPGG G F PPPPPPP
Sbjct: 664 PPPGGLGGFMP-------PPPPPPP 681
>Z68301-5|CAA92620.1| 301|Caenorhabditis elegans Hypothetical
protein W01B6.7 protein.
Length = 301
Score = 29.1 bits (62), Expect = 5.7
Identities = 12/24 (50%), Positives = 12/24 (50%)
Frame = +1
Query: 691 GGGGGGGXXXXXXXXXKXPPPPGG 762
GGGGGGG PP PGG
Sbjct: 88 GGGGGGGGGGCDGCCNPGPPGPGG 111
>V00148-1|CAA23464.1| 301|Caenorhabditis elegans protein (
Caenorhabditis elegansgene Col-2 coding for a collagen.
).
Length = 301
Score = 29.1 bits (62), Expect = 5.7
Identities = 12/24 (50%), Positives = 12/24 (50%)
Frame = +1
Query: 691 GGGGGGGXXXXXXXXXKXPPPPGG 762
GGGGGGG PP PGG
Sbjct: 88 GGGGGGGGGGCDGCCNPGPPGPGG 111
>J01048-1|AAA27990.1| 301|Caenorhabditis elegans protein (
C.elegans (nematode)collagen 2 (col-2) gene, complete
cds. ).
Length = 301
Score = 29.1 bits (62), Expect = 5.7
Identities = 12/24 (50%), Positives = 12/24 (50%)
Frame = +1
Query: 691 GGGGGGGXXXXXXXXXKXPPPPGG 762
GGGGGGG PP PGG
Sbjct: 88 GGGGGGGGGGCDGCCNPGPPGPGG 111
>AY347575-1|AAP97869.1| 301|Caenorhabditis elegans COLlagen
structural gene, probabledorsal and ventral cuticle
component, from embryo to adult,but maximal in dauer
(28.0 kD) (col-2) protein.
Length = 301
Score = 29.1 bits (62), Expect = 5.7
Identities = 12/24 (50%), Positives = 12/24 (50%)
Frame = +1
Query: 691 GGGGGGGXXXXXXXXXKXPPPPGG 762
GGGGGGG PP PGG
Sbjct: 88 GGGGGGGGGGCDGCCNPGPPGPGG 111
>AC024809-7|AAF59540.1| 315|Caenorhabditis elegans Hypothetical
protein Y53G8AR.9 protein.
Length = 315
Score = 29.1 bits (62), Expect = 5.7
Identities = 12/27 (44%), Positives = 12/27 (44%)
Frame = +2
Query: 692 GGGGGGXXXXXXXXXXXXPPPPXGGXG 772
GGGGG PPPP GG G
Sbjct: 196 GGGGGSGGSGGGSGRFPPPPPPYGGGG 222
>Z12018-1|CAD88219.2| 774|Caenorhabditis elegans Hypothetical
protein ZK643.8 protein.
Length = 774
Score = 28.7 bits (61), Expect = 7.6
Identities = 11/22 (50%), Positives = 11/22 (50%)
Frame = -1
Query: 755 GGGGXFXXXXXXXXXPPPPPPP 690
GGGG PPPPPPP
Sbjct: 291 GGGGYSAPAAAPPPPPPPPPPP 312
>Z11126-8|CAD88221.2| 774|Caenorhabditis elegans Hypothetical
protein ZK643.8 protein.
Length = 774
Score = 28.7 bits (61), Expect = 7.6
Identities = 11/22 (50%), Positives = 11/22 (50%)
Frame = -1
Query: 755 GGGGXFXXXXXXXXXPPPPPPP 690
GGGG PPPPPPP
Sbjct: 291 GGGGYSAPAAAPPPPPPPPPPP 312
>U40187-5|AAS80343.1| 1437|Caenorhabditis elegans Cytokinesis defect
protein 1, isoformb protein.
Length = 1437
Score = 28.7 bits (61), Expect = 7.6
Identities = 14/30 (46%), Positives = 14/30 (46%), Gaps = 5/30 (16%)
Frame = -1
Query: 764 PPPGG-----GGXFXXXXXXXXXPPPPPPP 690
PPPGG GG PPPPPPP
Sbjct: 746 PPPGGLPPISGGPPPPPPPPGGCPPPPPPP 775
>U40187-4|AAS80342.1| 1435|Caenorhabditis elegans Cytokinesis defect
protein 1, isoforma protein.
Length = 1435
Score = 28.7 bits (61), Expect = 7.6
Identities = 14/30 (46%), Positives = 14/30 (46%), Gaps = 5/30 (16%)
Frame = -1
Query: 764 PPPGG-----GGXFXXXXXXXXXPPPPPPP 690
PPPGG GG PPPPPPP
Sbjct: 746 PPPGGLPPISGGPPPPPPPPGGCPPPPPPP 775
>AF062008-1|AAC17501.1| 1018|Caenorhabditis elegans unknown protein.
Length = 1018
Score = 28.7 bits (61), Expect = 7.6
Identities = 14/30 (46%), Positives = 14/30 (46%), Gaps = 5/30 (16%)
Frame = -1
Query: 764 PPPGG-----GGXFXXXXXXXXXPPPPPPP 690
PPPGG GG PPPPPPP
Sbjct: 329 PPPGGLPPISGGPPPPPPPPGGCPPPPPPP 358
>AF535160-1|AAN33048.1| 468|Caenorhabditis elegans UNC-34 protein.
Length = 468
Score = 23.8 bits (49), Expect(2) = 8.5
Identities = 7/7 (100%), Positives = 7/7 (100%)
Frame = -1
Query: 710 PPPPPPP 690
PPPPPPP
Sbjct: 247 PPPPPPP 253
Score = 23.0 bits (47), Expect(2) = 8.5
Identities = 10/24 (41%), Positives = 10/24 (41%)
Frame = -1
Query: 764 PPPGGGGXFXXXXXXXXXPPPPPP 693
PPP GG PPP PP
Sbjct: 218 PPPPIGGIAPVNAHGAPPPPPLPP 241
>AC025722-5|AAO12397.1| 454|Caenorhabditis elegans Uncoordinated
protein 34, isoform a protein.
Length = 454
Score = 23.8 bits (49), Expect(2) = 8.5
Identities = 7/7 (100%), Positives = 7/7 (100%)
Frame = -1
Query: 710 PPPPPPP 690
PPPPPPP
Sbjct: 233 PPPPPPP 239
Score = 23.0 bits (47), Expect(2) = 8.5
Identities = 10/24 (41%), Positives = 10/24 (41%)
Frame = -1
Query: 764 PPPGGGGXFXXXXXXXXXPPPPPP 693
PPP GG PPP PP
Sbjct: 204 PPPPIGGIAPVNAHGAPPPPPLPP 227
>AC025722-6|AAO12398.1| 310|Caenorhabditis elegans Uncoordinated
protein 34, isoform b protein.
Length = 310
Score = 23.8 bits (49), Expect(2) = 8.8
Identities = 7/7 (100%), Positives = 7/7 (100%)
Frame = -1
Query: 710 PPPPPPP 690
PPPPPPP
Sbjct: 233 PPPPPPP 239
Score = 23.0 bits (47), Expect(2) = 8.8
Identities = 10/24 (41%), Positives = 10/24 (41%)
Frame = -1
Query: 764 PPPGGGGXFXXXXXXXXXPPPPPP 693
PPP GG PPP PP
Sbjct: 204 PPPPIGGIAPVNAHGAPPPPPLPP 227
>AF068713-14|AAK73895.1| 172|Caenorhabditis elegans Ground-like
(grd related) protein29 protein.
Length = 172
Score = 28.3 bits (60), Expect = 10.0
Identities = 11/22 (50%), Positives = 11/22 (50%)
Frame = -1
Query: 755 GGGGXFXXXXXXXXXPPPPPPP 690
GGGG PPPPPPP
Sbjct: 51 GGGGCGYGGGYGCGIPPPPPPP 72
>AC024798-8|AAK29921.3| 1115|Caenorhabditis elegans Hypothetical
protein Y48G9A.4 protein.
Length = 1115
Score = 28.3 bits (60), Expect = 10.0
Identities = 11/25 (44%), Positives = 11/25 (44%)
Frame = -1
Query: 764 PPPGGGGXFXXXXXXXXXPPPPPPP 690
PPP G PPPPPPP
Sbjct: 543 PPPPIAGLLAANGTNVPIPPPPPPP 567
Database: celegans
Posted date: Oct 23, 2007 1:18 PM
Number of letters in database: 12,740,198
Number of sequences in database: 27,780
Lambda K H
0.318 0.134 0.401
Gapped
Lambda K H
0.279 0.0580 0.190
Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 13,031,892
Number of Sequences: 27780
Number of extensions: 233282
Number of successful extensions: 3750
Number of sequences better than 10.0: 18
Number of HSP's better than 10.0 without gapping: 637
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 1701
length of database: 12,740,198
effective HSP length: 82
effective length of database: 10,462,238
effective search space used: 2887577688
frameshift window, decay const: 40, 0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)
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