Bombyx BLAST Result against celegans

BLASTX 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= BmNP11_T7_H08
         (911 letters)

Database: celegans 
           27,780 sequences; 12,740,198 total letters

Searching..................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

U40797-15|AAB37553.2| 1004|Caenorhabditis elegans Temporarily as...    30   2.0  
AF106580-3|AAC78205.1|  881|Caenorhabditis elegans Temporarily a...    29   3.5  
AC024790-13|AAL32247.1|  311|Caenorhabditis elegans Hypothetical...    29   3.5  
U13875-4|AAK67215.1| 1510|Caenorhabditis elegans Set (trithorax/...    29   4.6  
U13875-3|AAK67214.1| 1507|Caenorhabditis elegans Set (trithorax/...    29   4.6  
Z77662-15|CAI79240.1|  255|Caenorhabditis elegans Hypothetical p...    29   6.1  
AL132898-14|CAC14406.1| 1641|Caenorhabditis elegans Hypothetical...    29   6.1  
AF038615-6|AAB94146.1|  157|Caenorhabditis elegans Ground-like (...    29   6.1  
AL023844-8|CAA19534.1|  396|Caenorhabditis elegans Hypothetical ...    28   8.1  

>U40797-15|AAB37553.2| 1004|Caenorhabditis elegans Temporarily
           assigned gene nameprotein 77 protein.
          Length = 1004

 Score = 30.3 bits (65), Expect = 2.0
 Identities = 9/16 (56%), Positives = 12/16 (75%)
 Frame = -1

Query: 491 PPPPXXKKXPPPPPXK 444
           PPPP  ++ PPPPP +
Sbjct: 21  PPPPSPRRAPPPPPHR 36


>AF106580-3|AAC78205.1|  881|Caenorhabditis elegans Temporarily
           assigned gene nameprotein 268 protein.
          Length = 881

 Score = 29.5 bits (63), Expect = 3.5
 Identities = 10/14 (71%), Positives = 10/14 (71%)
 Frame = -1

Query: 491 PPPPXXKKXPPPPP 450
           PPPP   K PPPPP
Sbjct: 89  PPPPPTLKAPPPPP 102


>AC024790-13|AAL32247.1|  311|Caenorhabditis elegans Hypothetical
           protein Y47D7A.13 protein.
          Length = 311

 Score = 29.5 bits (63), Expect = 3.5
 Identities = 11/20 (55%), Positives = 11/20 (55%)
 Frame = +2

Query: 767 FFXXXXGXGGGGXXXPPPPP 826
           F     G GGGG   PPPPP
Sbjct: 16  FLFNLLGGGGGGCCAPPPPP 35



 Score = 28.7 bits (61), Expect = 6.1
 Identities = 10/14 (71%), Positives = 10/14 (71%)
 Frame = -3

Query: 825 GGGGGXXXPPPPXP 784
           GGGGG   PPPP P
Sbjct: 23  GGGGGCCAPPPPPP 36


>U13875-4|AAK67215.1| 1510|Caenorhabditis elegans Set
           (trithorax/polycomb) domaincontaining protein 2, isoform
           c protein.
          Length = 1510

 Score = 29.1 bits (62), Expect = 4.6
 Identities = 9/14 (64%), Positives = 11/14 (78%)
 Frame = -1

Query: 491 PPPPXXKKXPPPPP 450
           PPPP  ++ PPPPP
Sbjct: 298 PPPPIKEESPPPPP 311


>U13875-3|AAK67214.1| 1507|Caenorhabditis elegans Set
           (trithorax/polycomb) domaincontaining protein 2, isoform
           a protein.
          Length = 1507

 Score = 29.1 bits (62), Expect = 4.6
 Identities = 9/14 (64%), Positives = 11/14 (78%)
 Frame = -1

Query: 491 PPPPXXKKXPPPPP 450
           PPPP  ++ PPPPP
Sbjct: 298 PPPPIKEESPPPPP 311


>Z77662-15|CAI79240.1|  255|Caenorhabditis elegans Hypothetical
           protein F47B8.14 protein.
          Length = 255

 Score = 28.7 bits (61), Expect = 6.1
 Identities = 10/14 (71%), Positives = 10/14 (71%)
 Frame = +2

Query: 785 GXGGGGXXXPPPPP 826
           G GGGG   PPPPP
Sbjct: 32  GGGGGGDAAPPPPP 45



 Score = 28.7 bits (61), Expect = 6.1
 Identities = 10/14 (71%), Positives = 10/14 (71%)
 Frame = -3

Query: 825 GGGGGXXXPPPPXP 784
           GGGGG   PPPP P
Sbjct: 33  GGGGGDAAPPPPPP 46


>AL132898-14|CAC14406.1| 1641|Caenorhabditis elegans Hypothetical
           protein Y59A8B.1a protein.
          Length = 1641

 Score = 28.7 bits (61), Expect = 6.1
 Identities = 9/14 (64%), Positives = 10/14 (71%)
 Frame = -1

Query: 491 PPPPXXKKXPPPPP 450
           PPPP   + PPPPP
Sbjct: 784 PPPPRASEPPPPPP 797


>AF038615-6|AAB94146.1|  157|Caenorhabditis elegans Ground-like (grd
           related) protein19 protein.
          Length = 157

 Score = 28.7 bits (61), Expect = 6.1
 Identities = 10/14 (71%), Positives = 10/14 (71%)
 Frame = +2

Query: 785 GXGGGGXXXPPPPP 826
           G GGGG   PPPPP
Sbjct: 36  GGGGGGCCAPPPPP 49



 Score = 28.7 bits (61), Expect = 6.1
 Identities = 10/14 (71%), Positives = 10/14 (71%)
 Frame = -3

Query: 825 GGGGGXXXPPPPXP 784
           GGGGG   PPPP P
Sbjct: 37  GGGGGCCAPPPPPP 50


>AL023844-8|CAA19534.1|  396|Caenorhabditis elegans Hypothetical
           protein Y48A6B.13 protein.
          Length = 396

 Score = 28.3 bits (60), Expect = 8.1
 Identities = 9/15 (60%), Positives = 11/15 (73%)
 Frame = -1

Query: 488 PPPXXKKXPPPPPXK 444
           PPP  +K PPPPP +
Sbjct: 314 PPPPTQKAPPPPPTR 328


  Database: celegans
    Posted date:  Oct 23, 2007  1:18 PM
  Number of letters in database: 12,740,198
  Number of sequences in database:  27,780
  
Lambda     K      H
   0.318    0.134    0.401 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 10,657,143
Number of Sequences: 27780
Number of extensions: 202921
Number of successful extensions: 2447
Number of sequences better than 10.0: 9
Number of HSP's better than 10.0 without gapping: 487
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 1558
length of database: 12,740,198
effective HSP length: 81
effective length of database: 10,490,018
effective search space used: 2328783996
frameshift window, decay const: 40,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)