Bombyx BLAST Result against spombe

BLASTX 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= BmNP11_T7_H04
         (803 letters)

Database: spombe 
           5004 sequences; 2,362,478 total letters

Searching..................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

SPAC25G10.09c ||SPAC27F1.01c|actin cortical patch component, wit...    28   1.8  
SPAC4F8.12c |spp42|cwf6|U5 snRNP complex subunit Spp42|Schizosac...    28   1.8  
SPBC13E7.09 |vrp1||verprolin|Schizosaccharomyces pombe|chr 2|||M...    27   2.4  
SPAC4F10.15c |wsp1||WASp homolog|Schizosaccharomyces pombe|chr 1...    26   5.5  
SPAC23A1.17 |||WIP homolog|Schizosaccharomyces pombe|chr 1|||Manual    26   5.5  
SPCC895.05 |for3||formin For3|Schizosaccharomyces pombe|chr 3|||...    26   7.2  

>SPAC25G10.09c ||SPAC27F1.01c|actin cortical patch component, with EF
            hand and WH2 motif |Schizosaccharomyces pombe|chr
            1|||Manual
          Length = 1794

 Score = 27.9 bits (59), Expect = 1.8
 Identities = 11/26 (42%), Positives = 11/26 (42%)
 Frame = +3

Query: 687  PXPSXXXPXXPXPPPXPXXQPSXPXP 764
            P P    P  P  PP P   PS P P
Sbjct: 1708 PPPPMSVPPPPSAPPMPAGPPSAPPP 1733


>SPAC4F8.12c |spp42|cwf6|U5 snRNP complex subunit
           Spp42|Schizosaccharomyces pombe|chr 1|||Manual
          Length = 2363

 Score = 27.9 bits (59), Expect = 1.8
 Identities = 10/22 (45%), Positives = 10/22 (45%)
 Frame = +3

Query: 672 PXXPXPXPSXXXPXXPXPPPXP 737
           P  P P P    P  P PPP P
Sbjct: 9   PPPPPPPPGFEPPSQPPPPPPP 30


>SPBC13E7.09 |vrp1||verprolin|Schizosaccharomyces pombe|chr
           2|||Manual
          Length = 309

 Score = 27.5 bits (58), Expect = 2.4
 Identities = 12/34 (35%), Positives = 13/34 (38%)
 Frame = +3

Query: 669 RPXXPXPXPSXXXPXXPXPPPXPXXQPSXPXPXA 770
           RP  P P P+   P     PP P   P    P A
Sbjct: 146 RPSIPPPSPASAPPIPSKAPPIPSSLPPPAQPAA 179


>SPAC4F10.15c |wsp1||WASp homolog|Schizosaccharomyces pombe|chr
           1|||Manual
          Length = 574

 Score = 26.2 bits (55), Expect = 5.5
 Identities = 18/76 (23%), Positives = 21/76 (27%), Gaps = 2/76 (2%)
 Frame = +3

Query: 537 TXXPXXPPXAXXPLXXPXXVRXXXXPPXXXXXXXAXXXXAXGXXRPXXPXPXPSXXX--P 710
           T  P  P     P   P  +     P        A          P  P   P+     P
Sbjct: 412 TSTPPVPTPPSLPPSAPPSLPPSAPPSLPMGAPAAPPLPPSAPIAPPLPAGMPAAPPLPP 471

Query: 711 XXPXPPPXPXXQPSXP 758
             P PPP P   P+ P
Sbjct: 472 AAPAPPPAPAPAPAAP 487


>SPAC23A1.17 |||WIP homolog|Schizosaccharomyces pombe|chr 1|||Manual
          Length = 1611

 Score = 26.2 bits (55), Expect = 5.5
 Identities = 13/35 (37%), Positives = 15/35 (42%), Gaps = 3/35 (8%)
 Frame = +3

Query: 681  PXPXPSXXXPXXPXP---PPXPXXQPSXPXPXAXS 776
            P P PS   P  P P   PP P    + P P + S
Sbjct: 1023 PVPLPSADAPPIPVPSTAPPVPIPTSTPPVPKSSS 1057



 Score = 25.4 bits (53), Expect = 9.5
 Identities = 12/29 (41%), Positives = 13/29 (44%), Gaps = 1/29 (3%)
 Frame = +3

Query: 681  PXPXPSXXXPXXPXPPPXPXXQ-PSXPXP 764
            P P  S   P  P P P P  + PS P P
Sbjct: 1051 PVPKSSSGAPSAPPPVPAPSSEIPSIPAP 1079


>SPCC895.05 |for3||formin For3|Schizosaccharomyces pombe|chr
           3|||Manual
          Length = 1461

 Score = 25.8 bits (54), Expect = 7.2
 Identities = 10/28 (35%), Positives = 12/28 (42%)
 Frame = +3

Query: 681 PXPXPSXXXPXXPXPPPXPXXQPSXPXP 764
           P P P+      P PPP P    + P P
Sbjct: 750 PVPPPAPIMGGPPPPPPPPGVAGAGPPP 777


  Database: spombe
    Posted date:  Oct 4, 2007 10:57 AM
  Number of letters in database: 2,362,478
  Number of sequences in database:  5004
  
Lambda     K      H
   0.318    0.134    0.401 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 969,557
Number of Sequences: 5004
Number of extensions: 7870
Number of successful extensions: 52
Number of sequences better than 10.0: 6
Number of HSP's better than 10.0 without gapping: 20
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 45
length of database: 2,362,478
effective HSP length: 72
effective length of database: 2,002,190
effective search space used: 390427050
frameshift window, decay const: 40,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)