Bombyx BLAST Result against celegans

BLASTX 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= BmNP11_T7_H04
         (803 letters)

Database: celegans 
           27,780 sequences; 12,740,198 total letters

Searching..................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

AL023835-10|CAA19494.2|  691|Caenorhabditis elegans Hypothetical...    31   0.97 
U58755-7|AAB00696.1|  136|Caenorhabditis elegans Hypothetical pr...    30   1.7  
AF098500-3|ABD94103.1|  774|Caenorhabditis elegans Temporarily a...    30   2.2  
AF098500-2|AAC67399.2|  996|Caenorhabditis elegans Temporarily a...    30   2.2  
U41543-12|AAZ91345.1|  401|Caenorhabditis elegans Groundhog (hed...    29   2.9  
U58736-1|AAB00598.1|  302|Caenorhabditis elegans Dumpy : shorter...    29   5.1  
AF025467-2|AAN65301.1|  505|Caenorhabditis elegans Hypothetical ...    29   5.1  
AF025467-1|AAB71039.2|  528|Caenorhabditis elegans Hypothetical ...    29   5.1  
U39852-7|AAK39260.1|  240|Caenorhabditis elegans Ground-like (gr...    28   6.8  
Z46676-8|CAB60993.2|  388|Caenorhabditis elegans Hypothetical pr...    28   9.0  
U24189-3|AAC47514.1|  398|Caenorhabditis elegans RRM-type RNA bi...    28   9.0  
AC006638-2|AAK85481.1| 1256|Caenorhabditis elegans Cyclase assoc...    28   9.0  
AC006638-1|AAK85482.1|  495|Caenorhabditis elegans Cyclase assoc...    28   9.0  

>AL023835-10|CAA19494.2|  691|Caenorhabditis elegans Hypothetical
           protein Y37A1B.11 protein.
          Length = 691

 Score = 31.1 bits (67), Expect = 0.97
 Identities = 12/32 (37%), Positives = 14/32 (43%)
 Frame = +3

Query: 669 RPXXPXPXPSXXXPXXPXPPPXPXXQPSXPXP 764
           R   P P P    P  P P P P  +P+ P P
Sbjct: 544 REPTPPPPPREPTPREPTPEPEPVREPTPPPP 575


>U58755-7|AAB00696.1|  136|Caenorhabditis elegans Hypothetical
           protein C34D4.11 protein.
          Length = 136

 Score = 30.3 bits (65), Expect = 1.7
 Identities = 22/71 (30%), Positives = 22/71 (30%), Gaps = 1/71 (1%)
 Frame = -2

Query: 763 GXGXXGWXXGXGGGXGXXGX*XDGXG-XGXXGRXXPXAXXXXAXXXXXXXGGXXXXRTXX 587
           G G  GW  G GGG G  G    G G  G  G                  GG    R   
Sbjct: 49  GGGGPGWGRG-GGGSGWGGGRGGGWGNNGGGGNWGGNGGGGNGGGGRGGGGGGGGGRGGG 107

Query: 586 GXXRGXXAXGG 554
           G  RG    GG
Sbjct: 108 GGGRGGGGGGG 118


>AF098500-3|ABD94103.1|  774|Caenorhabditis elegans Temporarily
           assigned gene nameprotein 343, isoform b protein.
          Length = 774

 Score = 29.9 bits (64), Expect = 2.2
 Identities = 13/35 (37%), Positives = 13/35 (37%)
 Frame = +3

Query: 672 PXXPXPXPSXXXPXXPXPPPXPXXQPSXPXPXAXS 776
           P  P P P    P  P PPP P      P P   S
Sbjct: 74  PLPPPPLPLSNPPAKPTPPPPPPKPTIRPPPIPAS 108


>AF098500-2|AAC67399.2|  996|Caenorhabditis elegans Temporarily
           assigned gene nameprotein 343, isoform a protein.
          Length = 996

 Score = 29.9 bits (64), Expect = 2.2
 Identities = 13/35 (37%), Positives = 13/35 (37%)
 Frame = +3

Query: 672 PXXPXPXPSXXXPXXPXPPPXPXXQPSXPXPXAXS 776
           P  P P P    P  P PPP P      P P   S
Sbjct: 296 PLPPPPLPLSNPPAKPTPPPPPPKPTIRPPPIPAS 330


>U41543-12|AAZ91345.1|  401|Caenorhabditis elegans Groundhog
           (hedgehog-like family)protein 7 protein.
          Length = 401

 Score = 29.5 bits (63), Expect = 2.9
 Identities = 13/31 (41%), Positives = 14/31 (45%)
 Frame = +3

Query: 672 PXXPXPXPSXXXPXXPXPPPXPXXQPSXPXP 764
           P  P P P    P  P PPP P  Q + P P
Sbjct: 51  PPPPAPYPQQAVPA-PAPPPAPYPQHAVPAP 80



 Score = 29.5 bits (63), Expect = 2.9
 Identities = 17/61 (27%), Positives = 18/61 (29%)
 Frame = +3

Query: 555 PPXAXXPLXXPXXVRXXXXPPXXXXXXXAXXXXAXGXXRPXXPXPXPSXXXPXXPXPPPX 734
           P  A  P   P        PP       A    A    +P  P P P    P    PPP 
Sbjct: 93  PVPAPPPAPYPQHAVPAPAPPPAPYPQHAVPAPAPYQQQPPPPPPPPHYPPPPPHYPPPP 152

Query: 735 P 737
           P
Sbjct: 153 P 153


>U58736-1|AAB00598.1|  302|Caenorhabditis elegans Dumpy : shorter
           than wild-typeprotein 3 protein.
          Length = 302

 Score = 28.7 bits (61), Expect = 5.1
 Identities = 14/40 (35%), Positives = 15/40 (37%)
 Frame = +3

Query: 669 RPXXPXPXPSXXXPXXPXPPPXPXXQPSXPXPXAXSXXXG 788
           RP  P P P       P PPP P  Q   P P   +   G
Sbjct: 130 RPGNPGP-PGRDGALLPGPPPKPPCQKCPPGPPGPAGPPG 168


>AF025467-2|AAN65301.1|  505|Caenorhabditis elegans Hypothetical
           protein R148.5b protein.
          Length = 505

 Score = 28.7 bits (61), Expect = 5.1
 Identities = 12/26 (46%), Positives = 12/26 (46%)
 Frame = -2

Query: 388 GGXAPPXFXTPPPXFFXFXXPXXXGG 311
           GG  PP F  PPP F     P   GG
Sbjct: 346 GGPYPPFFPPPPPHFMRPSSPPTDGG 371


>AF025467-1|AAB71039.2|  528|Caenorhabditis elegans Hypothetical
           protein R148.5a protein.
          Length = 528

 Score = 28.7 bits (61), Expect = 5.1
 Identities = 12/26 (46%), Positives = 12/26 (46%)
 Frame = -2

Query: 388 GGXAPPXFXTPPPXFFXFXXPXXXGG 311
           GG  PP F  PPP F     P   GG
Sbjct: 346 GGPYPPFFPPPPPHFMRPSSPPTDGG 371


>U39852-7|AAK39260.1|  240|Caenorhabditis elegans Ground-like (grd
           related) protein 6 protein.
          Length = 240

 Score = 28.3 bits (60), Expect = 6.8
 Identities = 12/29 (41%), Positives = 13/29 (44%), Gaps = 1/29 (3%)
 Frame = +3

Query: 681 PXPXPSXXXPXXPX-PPPXPXXQPSXPXP 764
           P P P+   P  P  PPP P   P  P P
Sbjct: 57  PPPCPAQFCPPPPICPPPPPPPMPCPPPP 85


>Z46676-8|CAB60993.2|  388|Caenorhabditis elegans Hypothetical
           protein C08B11.5 protein.
          Length = 388

 Score = 27.9 bits (59), Expect = 9.0
 Identities = 13/31 (41%), Positives = 13/31 (41%)
 Frame = +3

Query: 672 PXXPXPXPSXXXPXXPXPPPXPXXQPSXPXP 764
           P  P P PS   P  P  PP P   P  P P
Sbjct: 261 PPVPPPPPSVT-PMPPPMPPTPGMTPRPPPP 290


>U24189-3|AAC47514.1|  398|Caenorhabditis elegans RRM-type RNA
           binding protein protein.
          Length = 398

 Score = 27.9 bits (59), Expect = 9.0
 Identities = 13/31 (41%), Positives = 13/31 (41%)
 Frame = +3

Query: 672 PXXPXPXPSXXXPXXPXPPPXPXXQPSXPXP 764
           P  P P PS   P  P  PP P   P  P P
Sbjct: 271 PPVPPPPPSVT-PMPPPMPPTPGMTPRPPPP 300


>AC006638-2|AAK85481.1| 1256|Caenorhabditis elegans Cyclase associated
            protein homologprotein 1, isoform a protein.
          Length = 1256

 Score = 27.9 bits (59), Expect = 9.0
 Identities = 12/26 (46%), Positives = 12/26 (46%)
 Frame = -3

Query: 402  KXGXGGGXPPPXFXPPPLXFFXXXXP 325
            K   G G PPP   PPP  FF    P
Sbjct: 1004 KAPAGPGGPPPPPPPPPADFFANIAP 1029


>AC006638-1|AAK85482.1|  495|Caenorhabditis elegans Cyclase
           associated protein homologprotein 1, isoform b protein.
          Length = 495

 Score = 27.9 bits (59), Expect = 9.0
 Identities = 12/26 (46%), Positives = 12/26 (46%)
 Frame = -3

Query: 402 KXGXGGGXPPPXFXPPPLXFFXXXXP 325
           K   G G PPP   PPP  FF    P
Sbjct: 243 KAPAGPGGPPPPPPPPPADFFANIAP 268


  Database: celegans
    Posted date:  Oct 23, 2007  1:18 PM
  Number of letters in database: 12,740,198
  Number of sequences in database:  27,780
  
Lambda     K      H
   0.318    0.134    0.401 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 6,490,143
Number of Sequences: 27780
Number of extensions: 90600
Number of successful extensions: 1161
Number of sequences better than 10.0: 13
Number of HSP's better than 10.0 without gapping: 424
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 934
length of database: 12,740,198
effective HSP length: 80
effective length of database: 10,517,798
effective search space used: 1966828226
frameshift window, decay const: 40,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)