Bombyx BLAST Result against spombe

BLASTX 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= BmNP11_T7_G22
         (1060 letters)

Database: spombe 
           5004 sequences; 2,362,478 total letters

Searching..................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

SPCC895.05 |for3||formin For3|Schizosaccharomyces pombe|chr 3|||...    35   0.022
SPAC4F10.15c |wsp1||WASp homolog|Schizosaccharomyces pombe|chr 1...    34   0.029
SPCC306.09c |cap1|cap|adenylyl cyclase-associated protein Cap1|S...    24   1.6  
SPAC4F8.12c |spp42|cwf6|U5 snRNP complex subunit Spp42|Schizosac...    28   1.9  
SPBC660.06 |||conserved fungal protein|Schizosaccharomyces pombe...    27   4.5  

>SPCC895.05 |for3||formin For3|Schizosaccharomyces pombe|chr
           3|||Manual
          Length = 1461

 Score = 34.7 bits (76), Expect = 0.022
 Identities = 17/49 (34%), Positives = 17/49 (34%)
 Frame = -2

Query: 801 PPPXXXXXKXXXXXXXGXPPPPPXXXGGGGGXXPXXXXXXGXXPPPPPP 655
           PPP               P PPP    GG    P      G  PPPPPP
Sbjct: 732 PPPPPPAVIVPTPAPAPIPVPPPAPIMGGPPPPPPPPGVAGAGPPPPPP 780



 Score = 33.1 bits (72), Expect = 0.068
 Identities = 16/49 (32%), Positives = 16/49 (32%)
 Frame = -2

Query: 801 PPPXXXXXKXXXXXXXGXPPPPPXXXGGGGGXXPXXXXXXGXXPPPPPP 655
           PPP               PPP P   G      P      G  PPPPPP
Sbjct: 734 PPPPAVIVPTPAPAPIPVPPPAPIMGGPPPPPPPPGVAGAGPPPPPPPP 782



 Score = 28.3 bits (60), Expect = 1.9
 Identities = 16/48 (33%), Positives = 16/48 (33%)
 Frame = +2

Query: 611 PPPPPXXFFFXKXPXGGGGGGXXPXXXXXXGXXPPPPPXXXGGGGGXP 754
           PPPPP        P         P      G  PPPPP    G G  P
Sbjct: 733 PPPPPAVIVPTPAP---APIPVPPPAPIMGGPPPPPPPPGVAGAGPPP 777



 Score = 27.5 bits (58), Expect = 3.4
 Identities = 18/57 (31%), Positives = 18/57 (31%)
 Frame = -2

Query: 747 PPPPPXXXGGGGGXXPXXXXXXGXXPPPPPPXGXXXKKNXXGGGGGXPPPXFXXPPP 577
           PPPPP          P         PPP P  G         G  G  PP    PPP
Sbjct: 732 PPPPPPAV-----IVPTPAPAPIPVPPPAPIMGGPPPPPPPPGVAGAGPPPPPPPPP 783


>SPAC4F10.15c |wsp1||WASp homolog|Schizosaccharomyces pombe|chr
           1|||Manual
          Length = 574

 Score = 34.3 bits (75), Expect = 0.029
 Identities = 21/75 (28%), Positives = 23/75 (30%)
 Frame = -2

Query: 801 PPPXXXXXKXXXXXXXGXPPPPPXXXGGGGGXXPXXXXXXGXXPPPPPPXGXXXKKNXXG 622
           PPP               PPPPP       G  P          PPPPP      ++   
Sbjct: 293 PPPSSRVSAAALAANKKRPPPPPPPSRRNRGKPPIGNGSSNSSLPPPPP----PPRSNAA 348

Query: 621 GGGGXPPPXFXXPPP 577
           G    PP     PPP
Sbjct: 349 GSIPLPPQGRSAPPP 363



 Score = 32.3 bits (70), Expect = 0.12
 Identities = 12/30 (40%), Positives = 12/30 (40%)
 Frame = -2

Query: 747 PPPPPXXXGGGGGXXPXXXXXXGXXPPPPP 658
           PPPPP       G  P         PPPPP
Sbjct: 337 PPPPPPPRSNAAGSIPLPPQGRSAPPPPPP 366



 Score = 28.7 bits (61), Expect = 1.5
 Identities = 20/78 (25%), Positives = 21/78 (26%)
 Frame = +2

Query: 521 KKXPPPXXXXXXKXXXXXKGGGXXKXGGGXPPPPPXXFFFXKXPXGGGGGGXXPXXXXXX 700
           K+ PPP             G G        PPPPP               G  P      
Sbjct: 309 KRPPPPPPPSRRNRGKPPIGNGSSNSSLPPPPPPPR----------SNAAGSIPLPPQGR 358

Query: 701 GXXPPPPPXXXGGGGGXP 754
              PPPPP      G  P
Sbjct: 359 SAPPPPPPRSAPSTGRQP 376


>SPCC306.09c |cap1|cap|adenylyl cyclase-associated protein
           Cap1|Schizosaccharomyces pombe|chr 3|||Manual
          Length = 551

 Score = 24.2 bits (50), Expect(2) = 1.6
 Identities = 8/12 (66%), Positives = 8/12 (66%)
 Frame = -1

Query: 673 PPPPPPXGXFXK 638
           PPPPPP   F K
Sbjct: 309 PPPPPPSNDFWK 320



 Score = 22.6 bits (46), Expect(2) = 1.6
 Identities = 7/9 (77%), Positives = 7/9 (77%)
 Frame = -1

Query: 682 GXXPPPPPP 656
           G  PPPPPP
Sbjct: 304 GLPPPPPPP 312


>SPAC4F8.12c |spp42|cwf6|U5 snRNP complex subunit
           Spp42|Schizosaccharomyces pombe|chr 1|||Manual
          Length = 2363

 Score = 28.3 bits (60), Expect = 1.9
 Identities = 16/41 (39%), Positives = 17/41 (41%)
 Frame = -2

Query: 753 GXPPPPPXXXGGGGGXXPXXXXXXGXXPPPPPPXGXXXKKN 631
           G PPPPP   G      P         PPPPPP     +KN
Sbjct: 7   GNPPPPPPPPGFEPPSQP---------PPPPPPGYVKKRKN 38



 Score = 26.6 bits (56), Expect = 5.9
 Identities = 9/14 (64%), Positives = 10/14 (71%)
 Frame = -1

Query: 673 PPPPPPXGXFXKKK 632
           PPPPPP G   K+K
Sbjct: 24  PPPPPPPGYVKKRK 37


>SPBC660.06 |||conserved fungal protein|Schizosaccharomyces
           pombe|chr 2|||Manual
          Length = 273

 Score = 27.1 bits (57), Expect = 4.5
 Identities = 16/48 (33%), Positives = 16/48 (33%)
 Frame = -2

Query: 753 GXPPPPPXXXGGGGGXXPXXXXXXGXXPPPPPPXGXXXKKNXXGGGGG 610
           G PPP P   GG GG         G       P G        GGG G
Sbjct: 198 GGPPPGPGGFGGFGGFGGEGHHHGGHGGFGGGPGGFEGGPGGFGGGPG 245


  Database: spombe
    Posted date:  Oct 4, 2007 10:57 AM
  Number of letters in database: 2,362,478
  Number of sequences in database:  5004
  
Lambda     K      H
   0.318    0.134    0.401 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 1,836,597
Number of Sequences: 5004
Number of extensions: 29762
Number of successful extensions: 214
Number of sequences better than 10.0: 5
Number of HSP's better than 10.0 without gapping: 33
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 104
length of database: 2,362,478
effective HSP length: 73
effective length of database: 1,997,186
effective search space used: 557214894
frameshift window, decay const: 40,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)