Bombyx BLAST Result against uniref50

BLASTX 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= BmNP11_T7_G19
         (813 letters)

Database: uniref50 
           1,657,284 sequences; 575,637,011 total letters

Searching..................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

UniRef50_Q6AW70 Cluster: Coat protein; n=1; Bombyx mori Macula-l...    59   1e-07
UniRef50_Q18657 Cluster: Putative uncharacterized protein wnk-1;...    36   1.2  
UniRef50_UPI00003654E6 Cluster: Ankyrin repeat domain-containing...    34   4.9  
UniRef50_Q8DM37 Cluster: Tll0286 protein; n=1; Synechococcus elo...    33   8.6  

>UniRef50_Q6AW70 Cluster: Coat protein; n=1; Bombyx mori Macula-like
           latent virus|Rep: Coat protein - Bombyx mori Macula-like
           latent virus
          Length = 237

 Score = 59.3 bits (137), Expect = 1e-07
 Identities = 26/29 (89%), Positives = 26/29 (89%)
 Frame = -1

Query: 654 IPXTNHPRLNIHFHQSPDAVXEGVRAGVK 568
           IP TNHPRLNIHFHQS DAV EGVRAGVK
Sbjct: 189 IPYTNHPRLNIHFHQSADAVLEGVRAGVK 217



 Score = 54.0 bits (124), Expect = 4e-06
 Identities = 32/74 (43%), Positives = 32/74 (43%)
 Frame = -3

Query: 730 GGXPXXXXXTXPXDXGYINPXXKXXXXXXXXXXXXXXXXSIPXXXXXXXXXRGKASVVIR 551
           GG       T P D GYINP  K                              KASVVIR
Sbjct: 164 GGLALMHQATLPCDLGYINPIIKSPIPYTNHPRLNIHFHQSADAVLEGVRAGVKASVVIR 223

Query: 550 GSISVSHPLVTGHG 509
           GSISVSHPLVTGHG
Sbjct: 224 GSISVSHPLVTGHG 237


>UniRef50_Q18657 Cluster: Putative uncharacterized protein wnk-1;
           n=2; Caenorhabditis elegans|Rep: Putative
           uncharacterized protein wnk-1 - Caenorhabditis elegans
          Length = 1838

 Score = 35.9 bits (79), Expect = 1.2
 Identities = 21/52 (40%), Positives = 25/52 (48%), Gaps = 1/52 (1%)
 Frame = -1

Query: 645 TNHPRLNIHFHQSPDAVXEGVRAGVKPP-LSSEAPSAYLTPSSLGMXKGVSP 493
           TNHP LN H  + P A+  G   G  PP L S   +A  TP   G    +SP
Sbjct: 147 TNHPHLNHHVSRIPQAIVTGGTNGSLPPLLISPTSAAAATPLISGKAGPMSP 198


>UniRef50_UPI00003654E6 Cluster: Ankyrin repeat domain-containing
           protein 13B.; n=1; Takifugu rubripes|Rep: Ankyrin repeat
           domain-containing protein 13B. - Takifugu rubripes
          Length = 634

 Score = 33.9 bits (74), Expect = 4.9
 Identities = 17/38 (44%), Positives = 22/38 (57%)
 Frame = -2

Query: 260 PSCYFSTPPFDTVLYDNIRTVLKDNKTALLSASIQASL 147
           PSC F  PP  TVL    R  L++++  LL  +IQ SL
Sbjct: 506 PSCVFEVPPGYTVLGSKQRDTLREDEEDLLQFAIQQSL 543


>UniRef50_Q8DM37 Cluster: Tll0286 protein; n=1; Synechococcus
           elongatus|Rep: Tll0286 protein - Synechococcus elongatus
           (Thermosynechococcus elongatus)
          Length = 158

 Score = 33.1 bits (72), Expect = 8.6
 Identities = 20/75 (26%), Positives = 33/75 (44%)
 Frame = -2

Query: 461 LRALLVVIPRILRSPPPTHPLIEDVVMATNQAIIDYKVKIADNNLVTHKELALKVSSIIG 282
           L  LL+VIP  L   P +H +I  +  A NQ ++  +  + DN   T + +       + 
Sbjct: 8   LLLLLLVIPLWLAVSPRSHAMIRTIEEAPNQVVVQSRHPLRDNRGFTWQVILFSRPDQLQ 67

Query: 281 TRVYVFDPSCYFSTP 237
            R+  F    +F  P
Sbjct: 68  LRLVGFPEQYHFRHP 82


  Database: uniref50
    Posted date:  Oct 5, 2007 11:19 AM
  Number of letters in database: 575,637,011
  Number of sequences in database:  1,657,284
  
Lambda     K      H
   0.318    0.134    0.401 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 636,594,437
Number of Sequences: 1657284
Number of extensions: 11957135
Number of successful extensions: 33324
Number of sequences better than 10.0: 4
Number of HSP's better than 10.0 without gapping: 32003
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 33293
length of database: 575,637,011
effective HSP length: 99
effective length of database: 411,565,895
effective search space used: 70377768045
frameshift window, decay const: 40,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)