Bombyx BLAST Result against rice

BLASTX 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= BmNP11_T7_G16
         (856 letters)

Database: rice 
           37,544 sequences; 14,793,348 total letters

Searching..................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

02_05_0002 - 24849189-24849825,24850267-24850328                       36   0.054
02_04_0382 - 22501041-22501279,22501717-22501810                       31   0.89 
07_03_1691 - 28726307-28726323,28726588-28726953,28727483-287275...    29   1.2  
06_03_1178 + 28203466-28204590,28204745-28205652,28206189-28206258     29   4.7  
08_02_1317 + 26095772-26096191,26096301-26096540,26096647-260967...    29   6.2  
01_07_0188 - 41866689-41866763,41866889-41867155,41867277-418677...    28   8.3  
01_03_0005 + 11568545-11569119,11569179-11569191                       28   8.3  

>02_05_0002 - 24849189-24849825,24850267-24850328
          Length = 232

 Score = 35.5 bits (78), Expect = 0.054
 Identities = 14/29 (48%), Positives = 16/29 (55%)
 Frame = +3

Query: 462 KKKKKXXPPPXXXXGGGGXPXKXXXPPPP 548
           +KKK+  P P    GGGG P     PPPP
Sbjct: 197 EKKKRKKPQPADTSGGGGHPHPPPPPPPP 225


>02_04_0382 - 22501041-22501279,22501717-22501810
          Length = 110

 Score = 31.5 bits (68), Expect = 0.89
 Identities = 12/21 (57%), Positives = 12/21 (57%)
 Frame = +2

Query: 482 PPPXXXXGGGGGXXKXXXPPP 544
           PPP    GGGGG  K   PPP
Sbjct: 83  PPPSPYYGGGGGYGKPPPPPP 103


>07_03_1691 -
           28726307-28726323,28726588-28726953,28727483-28727567,
           28728255-28728387,28729793-28730328
          Length = 378

 Score = 28.7 bits (61), Expect(2) = 1.2
 Identities = 11/21 (52%), Positives = 11/21 (52%)
 Frame = +2

Query: 485 PPXXXXGGGGGXXKXXXPPPP 547
           PP    GGGGG      PPPP
Sbjct: 28  PPIPSCGGGGGGAGPTPPPPP 48



 Score = 21.0 bits (42), Expect(2) = 1.2
 Identities = 6/6 (100%), Positives = 6/6 (100%)
 Frame = +2

Query: 626 PPPPPP 643
           PPPPPP
Sbjct: 44  PPPPPP 49


>06_03_1178 + 28203466-28204590,28204745-28205652,28206189-28206258
          Length = 700

 Score = 29.1 bits (62), Expect = 4.7
 Identities = 11/24 (45%), Positives = 12/24 (50%)
 Frame = -2

Query: 546 GGGGXXFFXXPPPPPXXXXGGGXF 475
           G GG  F   PPPPP     GG +
Sbjct: 233 GVGGPEFLPPPPPPPPTPAAGGNY 256


>08_02_1317 +
           26095772-26096191,26096301-26096540,26096647-26096712,
           26096836-26096904,26097004-26097075,26097164-26097382,
           26097480-26097581
          Length = 395

 Score = 28.7 bits (61), Expect = 6.2
 Identities = 11/22 (50%), Positives = 11/22 (50%)
 Frame = -2

Query: 546 GGGGXXFFXXPPPPPXXXXGGG 481
           GG G   F  PPP P    GGG
Sbjct: 76  GGAGAGLFGMPPPAPGDFAGGG 97


>01_07_0188 -
           41866689-41866763,41866889-41867155,41867277-41867722,
           41867945-41868033,41868279-41868368,41868661-41868739,
           41868979-41869042,41869597-41869684,41869776-41869836,
           41869906-41869969,41870134-41870188,41870275-41870346,
           41870469-41870551,41870629-41870724,41871279-41871383,
           41872159-41872227,41872470-41872561,41872667-41872886
          Length = 704

 Score = 28.3 bits (60), Expect = 8.3
 Identities = 11/22 (50%), Positives = 11/22 (50%)
 Frame = +2

Query: 482 PPPXXXXGGGGGXXKXXXPPPP 547
           PPP    GGGGG      PP P
Sbjct: 18  PPPPQAGGGGGGEFYRGPPPQP 39


>01_03_0005 + 11568545-11569119,11569179-11569191
          Length = 195

 Score = 28.3 bits (60), Expect = 8.3
 Identities = 11/22 (50%), Positives = 11/22 (50%)
 Frame = -2

Query: 546 GGGGXXFFXXPPPPPXXXXGGG 481
           GGGG       PPPP    GGG
Sbjct: 82  GGGGGTVMYTSPPPPYSGGGGG 103


  Database: rice
    Posted date:  Oct 4, 2007 10:57 AM
  Number of letters in database: 14,793,348
  Number of sequences in database:  37,544
  
Lambda     K      H
   0.313    0.147    0.508 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 17,187,692
Number of Sequences: 37544
Number of extensions: 480003
Number of successful extensions: 5868
Number of sequences better than 10.0: 7
Number of HSP's better than 10.0 without gapping: 1327
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 3210
length of database: 14,793,348
effective HSP length: 81
effective length of database: 11,752,284
effective search space used: 2385713652
frameshift window, decay const: 40,  0.1
T: 12
A: 40
X1: 16 ( 7.2 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 42 (21.7 bits)