Bombyx BLAST Result against spombe

BLASTX 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= BmNP11_T7_G12
         (822 letters)

Database: spombe 
           5004 sequences; 2,362,478 total letters

Searching..................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

SPCC962.02c |bir1|cut17, pbh1, SPCP31B10.10c|survivin homolog|Sc...    27   3.2  
SPCC594.01 ||SPCC736.16|DUF1769 family protein|Schizosaccharomyc...    26   5.6  
SPAC4F8.14c |hcs1|hcs|3-hydroxy-3-methylglutaryl-CoA synthase|Sc...    26   7.4  
SPCC613.12c |raf1|dos1, cmc1, clr8|Rik1-associated factor Raf1|S...    25   9.8  

>SPCC962.02c |bir1|cut17, pbh1, SPCP31B10.10c|survivin
           homolog|Schizosaccharomyces pombe|chr 3|||Manual
          Length = 997

 Score = 27.1 bits (57), Expect = 3.2
 Identities = 14/35 (40%), Positives = 20/35 (57%)
 Frame = +2

Query: 482 PHRSPQPPTRRPVLLVPARXSDGSVRRSLNPLXSP 586
           P R+PQ PT +PVLL   R  + S ++S   +  P
Sbjct: 272 PTRAPQSPT-KPVLLTAPRRKNKSPKKSKPAVFKP 305


>SPCC594.01 ||SPCC736.16|DUF1769 family protein|Schizosaccharomyces
           pombe|chr 3|||Manual
          Length = 791

 Score = 26.2 bits (55), Expect = 5.6
 Identities = 15/59 (25%), Positives = 29/59 (49%)
 Frame = +2

Query: 557 RRSLNPLXSPRDHHREGDXLLIGAGAGQTPSSDPGPTXVARRQREKKLSSPFRALXXML 733
           R SL    S R+  +  D   +G    +  ++    T   + ++EKK+S+P R+L  ++
Sbjct: 418 RMSLRSKKSLRNDSKSDD---VGNSTHRFSTASAASTSAVKTEKEKKMSAPRRSLDKLI 473


>SPAC4F8.14c |hcs1|hcs|3-hydroxy-3-methylglutaryl-CoA
           synthase|Schizosaccharomyces pombe|chr 1|||Manual
          Length = 447

 Score = 25.8 bits (54), Expect = 7.4
 Identities = 11/29 (37%), Positives = 18/29 (62%)
 Frame = -1

Query: 267 RPRGGAACLVVVLTAGTPLL*TGSDPGLR 181
           RP GGA C+ +++    P++    +PGLR
Sbjct: 158 RPTGGAGCVALLVGPNAPIV---FEPGLR 183


>SPCC613.12c |raf1|dos1, cmc1, clr8|Rik1-associated factor
           Raf1|Schizosaccharomyces pombe|chr 3|||Manual
          Length = 638

 Score = 25.4 bits (53), Expect = 9.8
 Identities = 16/34 (47%), Positives = 19/34 (55%)
 Frame = +3

Query: 360 LVFRDTPLGQNQPAGSERDTPPTGLLFNSIFGDD 461
           L+   T L  ++P  SER    T LL NSI GDD
Sbjct: 82  LLTSGTFLPNSRPYLSERVRKHTHLLSNSITGDD 115


  Database: spombe
    Posted date:  Oct 4, 2007 10:57 AM
  Number of letters in database: 2,362,478
  Number of sequences in database:  5004
  
Lambda     K      H
   0.318    0.134    0.401 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 2,562,102
Number of Sequences: 5004
Number of extensions: 48048
Number of successful extensions: 137
Number of sequences better than 10.0: 4
Number of HSP's better than 10.0 without gapping: 135
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 137
length of database: 2,362,478
effective HSP length: 72
effective length of database: 2,002,190
effective search space used: 402440190
frameshift window, decay const: 40,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)