Last updated: 2022/11/18
BLASTX 2.2.12 [Aug-07-2005]
Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer,
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997),
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs", Nucleic Acids Res. 25:3389-3402.
Query= BmNP11_T7_G12
(822 letters)
Database: rice
37,544 sequences; 14,793,348 total letters
Searching..................................................done
Score E
Sequences producing significant alignments: (bits) Value
02_03_0093 - 15120951-15121344,15121658-15121953,15122119-151224... 32 0.63
04_04_1023 + 30201374-30201487,30201601-30202285,30202402-302025... 31 0.84
03_02_0330 + 7502593-7504956,7505020-7506312,7522011-7522235 31 1.1
04_03_0672 + 18559984-18559986,18560096-18560569,18560666-185608... 31 1.5
07_01_0387 + 2902957-2904705 30 1.9
02_03_0116 - 15440263-15441024,15441097-15443451 30 2.6
05_06_0122 - 25775652-25775936,25776027-25776103,25776177-257762... 29 3.4
05_03_0649 - 16566815-16567392,16567491-16567623,16568000-165687... 29 3.4
04_04_0645 + 26913947-26915783,26915833-26916308,26916372-26917220 29 3.4
11_06_0022 + 19321886-19321918,19323059-19323131,19323587-193236... 29 4.5
07_03_0965 - 22996575-22999112,22999202-22999636,22999717-229998... 29 4.5
01_06_1164 - 35026345-35026954,35027853-35027939,35028120-350284... 29 4.5
07_03_1090 + 23891294-23892222,23892317-23892516,23895241-238954... 29 5.9
03_02_0511 + 9016215-9016425,9017292-9017365,9018399-9018609,901... 29 5.9
11_02_0059 - 7883980-7884141,7884423-7884467,7884629-7884715,788... 28 7.8
05_07_0104 + 27715123-27715350 28 7.8
03_02_0402 - 8151448-8151669,8151916-8152417,8154537-8155105 28 7.8
>02_03_0093 -
15120951-15121344,15121658-15121953,15122119-15122419,
15123233-15123628,15123883-15124067
Length = 523
Score = 31.9 bits (69), Expect = 0.63
Identities = 21/63 (33%), Positives = 31/63 (49%), Gaps = 3/63 (4%)
Frame = +2
Query: 137 HPLNDSPALLHPTSDLSPGSEPVQSRGVPAVNTTTRHAAPPRGR---PTDGSLRR*STTN 307
HP + P L TS+ PG PV++ G+ + +T R PPR P+ R S+
Sbjct: 405 HP--EGPKLHAITSESQPGQAPVRTGGMRLMTSTGRDNQPPRSSGVPPSPSEWRSSSSRW 462
Query: 308 DVG 316
D+G
Sbjct: 463 DLG 465
>04_04_1023 +
30201374-30201487,30201601-30202285,30202402-30202506,
30202561-30203939
Length = 760
Score = 31.5 bits (68), Expect = 0.84
Identities = 24/83 (28%), Positives = 35/83 (42%)
Frame = +2
Query: 38 SYEVPAPRGRAGYVRLNDLQVLRADRGPKDFRAHPLNDSPALLHPTSDLSPGSEPVQSRG 217
S + P PRGR G VR + L +R D G ++ + A +H ++R
Sbjct: 105 SKDAPLPRGRRGTVRSSKL--IRPDDGEEEGKEDENRGENAPVHGEGRRGASR---RARA 159
Query: 218 VPAVNTTTRHAAPPRGRPTDGSL 286
P V TTR A P + G +
Sbjct: 160 EPVVAPTTRRRAAPTSKIETGDV 182
>03_02_0330 + 7502593-7504956,7505020-7506312,7522011-7522235
Length = 1293
Score = 31.1 bits (67), Expect = 1.1
Identities = 18/53 (33%), Positives = 28/53 (52%)
Frame = +2
Query: 488 RSPQPPTRRPVLLVPARXSDGSVRRSLNPLXSPRDHHREGDXLLIGAGAGQTP 646
R+P PP+RR + A +G R + +P S + R+G+ L+ G G TP
Sbjct: 28 RTPPPPSRRSLRREEAL--EGVERSATSPPTSDGEGRRDGERRLLVYGDGSTP 78
>04_03_0672 +
18559984-18559986,18560096-18560569,18560666-18560836,
18561494-18561640
Length = 264
Score = 30.7 bits (66), Expect = 1.5
Identities = 21/63 (33%), Positives = 27/63 (42%), Gaps = 6/63 (9%)
Frame = +2
Query: 482 PHRSPQPPTRRPVLLVPARXSDGSVRRSLNPLXSPR---DHHRE---GDXLLIGAGAGQT 643
P R P+PP++ P L PA D + +NP R D HR +G G G
Sbjct: 41 PRRHPEPPSKSP--LHPAYTPDAQGQSPMNPQHGRRQEADPHRRHSLSQQREVGGGIGSA 98
Query: 644 PSS 652
P S
Sbjct: 99 PRS 101
>07_01_0387 + 2902957-2904705
Length = 582
Score = 30.3 bits (65), Expect = 1.9
Identities = 25/77 (32%), Positives = 37/77 (48%), Gaps = 6/77 (7%)
Frame = +2
Query: 497 QPPTRR-PVL-LVPARXSDGSVRRSLNPLXSPRDHHR--EGDXLL--IGAGAGQTPSSDP 658
+PP R PV +PA VR NPL +PR H +GD +L + G+ S
Sbjct: 106 RPPVRGLPVSGRLPACLDGVYVRNGANPLHAPRAGHHLFDGDGMLHAVRLAGGRAESYAC 165
Query: 659 GPTXVARRQREKKLSSP 709
T AR ++E+++ P
Sbjct: 166 RFTETARLRQEREMGRP 182
>02_03_0116 - 15440263-15441024,15441097-15443451
Length = 1038
Score = 29.9 bits (64), Expect = 2.6
Identities = 18/53 (33%), Positives = 27/53 (50%)
Frame = +2
Query: 488 RSPQPPTRRPVLLVPARXSDGSVRRSLNPLXSPRDHHREGDXLLIGAGAGQTP 646
R+P PP+RR + A +G R +P S + R+G+ L+ G G TP
Sbjct: 28 RTPPPPSRRSLRREEAL--EGVERSVTSPPTSDGEGRRDGERRLLVYGDGSTP 78
>05_06_0122 -
25775652-25775936,25776027-25776103,25776177-25776281,
25776353-25776542,25776617-25776804,25776882-25777191
Length = 384
Score = 29.5 bits (63), Expect = 3.4
Identities = 23/80 (28%), Positives = 30/80 (37%), Gaps = 1/80 (1%)
Frame = +3
Query: 240 PDTRRHPEDARP-TGR*GDSRRPTTSVSAVRRPYQAARAVPLVFRDTPLGQNQPAGSERD 416
P HP D +P T S P T Q+A A ++ P G AG +
Sbjct: 11 PSVEDHPSDNQPATDNVEPSNEPPTG-------NQSAEAEVGANQEPPTGNQSDAGPSQK 63
Query: 417 TPPTGLLFNSIFGDDSDDEN 476
P NS G D+D E+
Sbjct: 64 VPEVEAQTNSPLGKDADSES 83
>05_03_0649 -
16566815-16567392,16567491-16567623,16568000-16568765,
16569242-16569260,16569320-16569367,16569401-16569506
Length = 549
Score = 29.5 bits (63), Expect = 3.4
Identities = 22/64 (34%), Positives = 27/64 (42%), Gaps = 5/64 (7%)
Frame = +2
Query: 140 PLNDSPALLHPTSDLSPGSEPVQSRGVPAVNTTTRHAAPPR-----GRPTDGSLRR*STT 304
P D P + P+S SP P S A HAAPPR RP +L S++
Sbjct: 115 PWLDMPPVQGPSSSPSPSPSPAPSPASSAA--VAEHAAPPRRGEEHARPRSIALPPASSS 172
Query: 305 NDVG 316
D G
Sbjct: 173 GDAG 176
>04_04_0645 + 26913947-26915783,26915833-26916308,26916372-26917220
Length = 1053
Score = 29.5 bits (63), Expect = 3.4
Identities = 17/53 (32%), Positives = 27/53 (50%)
Frame = +2
Query: 488 RSPQPPTRRPVLLVPARXSDGSVRRSLNPLXSPRDHHREGDXLLIGAGAGQTP 646
R+P PP+RR + A +G R + +P + R+G+ L+ G G TP
Sbjct: 28 RTPPPPSRRSLRREEAL--EGVERSATSPHAGDGEGRRDGERRLLVYGDGSTP 78
>11_06_0022 +
19321886-19321918,19323059-19323131,19323587-19323680,
19324383-19324499,19324584-19324641,19324713-19325114
Length = 258
Score = 29.1 bits (62), Expect = 4.5
Identities = 19/62 (30%), Positives = 27/62 (43%), Gaps = 1/62 (1%)
Frame = +2
Query: 20 RAGGRTSYEVPAPRGRAGYVRLNDLQVLRADRGPKDFRAHPLNDS-PALLHPTSDLSPGS 196
R GR P R GYV+ D + AD+G A P ++ P +H T + P +
Sbjct: 139 RGRGRGRGRPPTKRKEVGYVQFEDESSMFADQG----EALPGEETVPETIHGTESVPPST 194
Query: 197 EP 202
P
Sbjct: 195 HP 196
>07_03_0965 -
22996575-22999112,22999202-22999636,22999717-22999801,
22999888-22999957,23000050-23000293,23000396-23000482,
23000655-23000706,23000830-23001226,23001324-23001648,
23001748-23001914,23002007-23002547
Length = 1646
Score = 29.1 bits (62), Expect = 4.5
Identities = 18/58 (31%), Positives = 23/58 (39%)
Frame = +2
Query: 494 PQPPTRRPVLLVPARXSDGSVRRSLNPLXSPRDHHREGDXLLIGAGAGQTPSSDPGPT 667
P PP RR + + G S P SPR R G+ L++ G G D T
Sbjct: 22 PPPPRRR----LRSSGGGGGGSGSGGPRDSPRSERRRGERLMLNGGGGGGGRDDDDDT 75
>01_06_1164 -
35026345-35026954,35027853-35027939,35028120-35028493,
35037372-35038586,35038659-35039316,35039331-35041012
Length = 1541
Score = 29.1 bits (62), Expect = 4.5
Identities = 17/52 (32%), Positives = 27/52 (51%)
Frame = +2
Query: 491 SPQPPTRRPVLLVPARXSDGSVRRSLNPLXSPRDHHREGDXLLIGAGAGQTP 646
+P PP+RR + A +G R + +P S + R+G+ L+ G G TP
Sbjct: 29 TPPPPSRRSLRREEAL--EGVERSATSPPMSDGEGRRDGERRLLVYGDGSTP 78
>07_03_1090 +
23891294-23892222,23892317-23892516,23895241-23895482,
23895771-23896461,23896486-23896562
Length = 712
Score = 28.7 bits (61), Expect = 5.9
Identities = 22/90 (24%), Positives = 37/90 (41%), Gaps = 2/90 (2%)
Frame = +2
Query: 479 GPHRSPQPPTRRPVLLVPARXSDG--SVRRSLNPLXSPRDHHREGDXLLIGAGAGQTPSS 652
G R P+PP +P+ R G +V + + R + L + +G G SS
Sbjct: 272 GAARPPKPPHLKPLHWDKLRAISGRTTVWDQVKNSDTFRVDEEAMESLFLNSGGGGAGSS 331
Query: 653 DPGPTXVARRQREKKLSSPFRALXXMLIXK 742
DP ++E++L P R ++ K
Sbjct: 332 DPAARRGGSGKQERRLLDPKRLQNVAIMLK 361
>03_02_0511 +
9016215-9016425,9017292-9017365,9018399-9018609,
9019235-9019263,9019646-9020798,9021022-9021251
Length = 635
Score = 28.7 bits (61), Expect = 5.9
Identities = 20/52 (38%), Positives = 29/52 (55%)
Frame = +3
Query: 309 TSVSAVRRPYQAARAVPLVFRDTPLGQNQPAGSERDTPPTGLLFNSIFGDDS 464
TS SA PY +RA P+ ++ P Q + + S DTP + ++IFG DS
Sbjct: 380 TSRSACDTPY--SRASPIPEQEVPTAQWKTSRSACDTPYSRNSPSNIFGLDS 429
>11_02_0059 -
7883980-7884141,7884423-7884467,7884629-7884715,
7885746-7885874,7885995-7886151,7886248-7886350,
7887050-7887103,7887334-7887451,7888549-7888700,
7890166-7891852
Length = 897
Score = 28.3 bits (60), Expect = 7.8
Identities = 12/28 (42%), Positives = 15/28 (53%)
Frame = +2
Query: 197 EPVQSRGVPAVNTTTRHAAPPRGRPTDG 280
E + +RG T +HA PPRG P G
Sbjct: 119 EKMMTRGRAETETARKHAPPPRGLPLLG 146
>05_07_0104 + 27715123-27715350
Length = 75
Score = 28.3 bits (60), Expect = 7.8
Identities = 11/21 (52%), Positives = 11/21 (52%)
Frame = -3
Query: 304 GRRLSPQRPVGRASSGWRRVS 242
GRRL P P R W RVS
Sbjct: 31 GRRLHPPAPAARGGGAWNRVS 51
>03_02_0402 - 8151448-8151669,8151916-8152417,8154537-8155105
Length = 430
Score = 28.3 bits (60), Expect = 7.8
Identities = 12/29 (41%), Positives = 15/29 (51%)
Frame = +2
Query: 572 PLXSPRDHHREGDXLLIGAGAGQTPSSDP 658
PL +P DHH G + AG PS+ P
Sbjct: 91 PLPAPYDHHHRGGGAGVPAGGEFPPSAHP 119
Database: rice
Posted date: Oct 4, 2007 10:57 AM
Number of letters in database: 14,793,348
Number of sequences in database: 37,544
Lambda K H
0.318 0.134 0.401
Gapped
Lambda K H
0.279 0.0580 0.190
Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 21,156,022
Number of Sequences: 37544
Number of extensions: 489096
Number of successful extensions: 1872
Number of sequences better than 10.0: 17
Number of HSP's better than 10.0 without gapping: 1770
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 1871
length of database: 14,793,348
effective HSP length: 81
effective length of database: 11,752,284
effective search space used: 2256438528
frameshift window, decay const: 40, 0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)
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