Bombyx BLAST Result against human

BLASTX 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= BmNP11_T7_G04
         (879 letters)

Database: human 
           237,096 sequences; 76,859,062 total letters

Searching..................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

BC090853-1|AAH90853.1|  289|Homo sapiens HOXD8 protein protein.        32   2.4  
BC038709-1|AAH38709.1|  289|Homo sapiens homeobox D8 protein.          32   2.4  
AY014304-1|AAG42152.1|  290|Homo sapiens HOXD8 protein.                32   2.4  
BC000401-1|AAH00401.2|  894|Homo sapiens SF3B2 protein protein.        27   6.8  
BC053577-1|AAH53577.1|  877|Homo sapiens SF3B2 protein protein.        27   6.8  
U41371-1|AAA97461.1|  872|Homo sapiens spliceosome associated pr...    27   6.8  
BX537771-1|CAD97834.1|  799|Homo sapiens hypothetical protein pr...    27   6.8  

>BC090853-1|AAH90853.1|  289|Homo sapiens HOXD8 protein protein.
          Length = 289

 Score = 32.3 bits (70), Expect = 2.4
 Identities = 19/54 (35%), Positives = 21/54 (38%), Gaps = 2/54 (3%)
 Frame = +3

Query: 534 PPPXGGG--GXXKKXFFFXXXGGGGXXXXXXXXXKPPPXXXXXXXPPPPPPXXG 689
           PPP G G  G   +   +   GGG           PPP       PPPPPP  G
Sbjct: 76  PPPSGTGCGGREGRGQEYFHPGGGSPAAAYQAAPPPPPHPPP---PPPPPPCGG 126


>BC038709-1|AAH38709.1|  289|Homo sapiens homeobox D8 protein.
          Length = 289

 Score = 32.3 bits (70), Expect = 2.4
 Identities = 19/54 (35%), Positives = 21/54 (38%), Gaps = 2/54 (3%)
 Frame = +3

Query: 534 PPPXGGG--GXXKKXFFFXXXGGGGXXXXXXXXXKPPPXXXXXXXPPPPPPXXG 689
           PPP G G  G   +   +   GGG           PPP       PPPPPP  G
Sbjct: 76  PPPSGTGCGGREGRGQEYFHPGGGSPAAAYQAAPPPPPHPPP---PPPPPPCGG 126


>AY014304-1|AAG42152.1|  290|Homo sapiens HOXD8 protein.
          Length = 290

 Score = 32.3 bits (70), Expect = 2.4
 Identities = 19/54 (35%), Positives = 21/54 (38%), Gaps = 2/54 (3%)
 Frame = +3

Query: 534 PPPXGGG--GXXKKXFFFXXXGGGGXXXXXXXXXKPPPXXXXXXXPPPPPPXXG 689
           PPP G G  G   +   +   GGG           PPP       PPPPPP  G
Sbjct: 76  PPPSGTGCGGREGRGQEYFHPGGGSPAAAYQAAPPPPPHPPP---PPPPPPCGG 126


>BC000401-1|AAH00401.2|  894|Homo sapiens SF3B2 protein protein.
          Length = 894

 Score = 26.6 bits (56), Expect(2) = 6.8
 Identities = 9/16 (56%), Positives = 9/16 (56%)
 Frame = +3

Query: 633 PPPXXXXXXXPPPPPP 680
           PPP       PPPPPP
Sbjct: 93  PPPLGLPPLQPPPPPP 108



 Score = 22.6 bits (46), Expect(2) = 6.8
 Identities = 7/9 (77%), Positives = 7/9 (77%)
 Frame = +3

Query: 663 PPPPPPXXG 689
           PPPPPP  G
Sbjct: 107 PPPPPPGLG 115


>BC053577-1|AAH53577.1|  877|Homo sapiens SF3B2 protein protein.
          Length = 877

 Score = 26.6 bits (56), Expect(2) = 6.8
 Identities = 9/16 (56%), Positives = 9/16 (56%)
 Frame = +3

Query: 633 PPPXXXXXXXPPPPPP 680
           PPP       PPPPPP
Sbjct: 94  PPPLGLPPLQPPPPPP 109



 Score = 22.6 bits (46), Expect(2) = 6.8
 Identities = 7/9 (77%), Positives = 7/9 (77%)
 Frame = +3

Query: 663 PPPPPPXXG 689
           PPPPPP  G
Sbjct: 108 PPPPPPGLG 116


>U41371-1|AAA97461.1|  872|Homo sapiens spliceosome associated
           protein protein.
          Length = 872

 Score = 26.6 bits (56), Expect(2) = 6.8
 Identities = 9/16 (56%), Positives = 9/16 (56%)
 Frame = +3

Query: 633 PPPXXXXXXXPPPPPP 680
           PPP       PPPPPP
Sbjct: 71  PPPLGLPPLQPPPPPP 86



 Score = 22.6 bits (46), Expect(2) = 6.8
 Identities = 7/9 (77%), Positives = 7/9 (77%)
 Frame = +3

Query: 663 PPPPPPXXG 689
           PPPPPP  G
Sbjct: 85  PPPPPPGLG 93


>BX537771-1|CAD97834.1|  799|Homo sapiens hypothetical protein
           protein.
          Length = 799

 Score = 26.6 bits (56), Expect(2) = 6.8
 Identities = 9/16 (56%), Positives = 9/16 (56%)
 Frame = +3

Query: 633 PPPXXXXXXXPPPPPP 680
           PPP       PPPPPP
Sbjct: 96  PPPLGLPPLQPPPPPP 111



 Score = 22.6 bits (46), Expect(2) = 6.8
 Identities = 7/9 (77%), Positives = 7/9 (77%)
 Frame = +3

Query: 663 PPPPPPXXG 689
           PPPPPP  G
Sbjct: 110 PPPPPPGLG 118


  Database: human
    Posted date:  Oct 23, 2007  1:18 PM
  Number of letters in database: 76,859,062
  Number of sequences in database:  237,096
  
Lambda     K      H
   0.318    0.134    0.401 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 89,155,296
Number of Sequences: 237096
Number of extensions: 2073372
Number of successful extensions: 15444
Number of sequences better than 10.0: 7
Number of HSP's better than 10.0 without gapping: 4123
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 10937
length of database: 76,859,062
effective HSP length: 90
effective length of database: 55,520,422
effective search space used: 11215125244
frameshift window, decay const: 40,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)