Last updated: 2022/11/18
BLASTX 2.2.12 [Aug-07-2005]
Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer,
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997),
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs", Nucleic Acids Res. 25:3389-3402.
Query= BmNP11_T7_G04
(879 letters)
Database: celegans
27,780 sequences; 12,740,198 total letters
Searching..................................................done
Score E
Sequences producing significant alignments: (bits) Value
U00058-3|AAD31933.1| 162|Caenorhabditis elegans Ground-like (gr... 33 0.36
Z68338-7|CAA92756.2| 866|Caenorhabditis elegans Hypothetical pr... 32 0.47
U40187-5|AAS80343.1| 1437|Caenorhabditis elegans Cytokinesis def... 32 0.47
U40187-4|AAS80342.1| 1435|Caenorhabditis elegans Cytokinesis def... 32 0.47
AF062008-1|AAC17501.1| 1018|Caenorhabditis elegans unknown protein. 32 0.47
AF003151-19|AAK18922.1| 988|Caenorhabditis elegans Hypothetical... 30 2.5
Z12018-1|CAD88219.2| 774|Caenorhabditis elegans Hypothetical pr... 29 3.3
Z11126-8|CAD88221.2| 774|Caenorhabditis elegans Hypothetical pr... 29 3.3
Z46676-8|CAB60993.2| 388|Caenorhabditis elegans Hypothetical pr... 29 4.4
U24189-3|AAC47514.1| 398|Caenorhabditis elegans RRM-type RNA bi... 29 4.4
AL117204-20|CAB55136.2| 699|Caenorhabditis elegans Hypothetical... 29 4.4
AJ243905-1|CAB64866.1| 699|Caenorhabditis elegans SF1 protein p... 29 4.4
AC024798-8|AAK29921.3| 1115|Caenorhabditis elegans Hypothetical ... 28 7.7
>U00058-3|AAD31933.1| 162|Caenorhabditis elegans Ground-like (grd
related) protein22 protein.
Length = 162
Score = 32.7 bits (71), Expect = 0.36
Identities = 21/57 (36%), Positives = 22/57 (38%)
Frame = -2
Query: 686 PXXGGGGGXXXXXPRGGGFXXXXXXXXXPPPPXXXKKKXFFXXPPPPXGGGGXXKKK 516
P GGGGG GGG PPPP PPPP G G +KK
Sbjct: 21 PMAGGGGG-------GGGCAPAAPACAPPPPPMCGCAPPPPPPPPPPMCGCGCGRKK 70
Score = 32.3 bits (70), Expect = 0.47
Identities = 13/30 (43%), Positives = 13/30 (43%)
Frame = +3
Query: 591 GGGGXXXXXXXXXKPPPXXXXXXXPPPPPP 680
GGGG PPP PPPPPP
Sbjct: 27 GGGGGCAPAAPACAPPPPPMCGCAPPPPPP 56
Score = 32.3 bits (70), Expect = 0.47
Identities = 13/30 (43%), Positives = 13/30 (43%)
Frame = +3
Query: 591 GGGGXXXXXXXXXKPPPXXXXXXXPPPPPP 680
GGGG PPP PPPPPP
Sbjct: 28 GGGGCAPAAPACAPPPPPMCGCAPPPPPPP 57
Score = 29.5 bits (63), Expect = 3.3
Identities = 21/59 (35%), Positives = 23/59 (38%), Gaps = 1/59 (1%)
Frame = -3
Query: 688 PXXGGGGGGXXXHXXXGGGFXXXXXXXXXPPPPXXXKKXXFFXXPPPP-XGGGXXKKKK 515
P GGGGG GGG PPPP PPPP G G +KK+
Sbjct: 21 PMAGGGGG--------GGGCAPAAPACAPPPPPMCGCAPPPPPPPPPPMCGCGCGRKKR 71
Score = 28.7 bits (61), Expect = 5.8
Identities = 12/30 (40%), Positives = 12/30 (40%)
Frame = +3
Query: 591 GGGGXXXXXXXXXKPPPXXXXXXXPPPPPP 680
GGG PPP PPPPPP
Sbjct: 29 GGGCAPAAPACAPPPPPMCGCAPPPPPPPP 58
>Z68338-7|CAA92756.2| 866|Caenorhabditis elegans Hypothetical
protein T24B8.4 protein.
Length = 866
Score = 32.3 bits (70), Expect = 0.47
Identities = 18/49 (36%), Positives = 18/49 (36%)
Frame = +3
Query: 534 PPPXGGGGXXKKXFFFXXXGGGGXXXXXXXXXKPPPXXXXXXXPPPPPP 680
PPP G GG F GG PPP PPPPPP
Sbjct: 75 PPPPGPGGIPPPPPMF---AGGIPPPPPMMGGIPPPPPMFGAPPPPPPP 120
>U40187-5|AAS80343.1| 1437|Caenorhabditis elegans Cytokinesis defect
protein 1, isoformb protein.
Length = 1437
Score = 32.3 bits (70), Expect = 0.47
Identities = 20/66 (30%), Positives = 20/66 (30%)
Frame = +3
Query: 492 PPPXXKKXFFFXXXPPPXGGGGXXKKXFFFXXXGGGGXXXXXXXXXKPPPXXXXXXXPPP 671
PPP PPP GG GG PPP PPP
Sbjct: 714 PPPPGLPPITGGPPPPPPPGGLPPITGGPPPPPPPGGLPPISGGPPPPPPPPGGCPPPPP 773
Query: 672 PPPXXG 689
PPP G
Sbjct: 774 PPPPGG 779
>U40187-4|AAS80342.1| 1435|Caenorhabditis elegans Cytokinesis defect
protein 1, isoforma protein.
Length = 1435
Score = 32.3 bits (70), Expect = 0.47
Identities = 20/66 (30%), Positives = 20/66 (30%)
Frame = +3
Query: 492 PPPXXKKXFFFXXXPPPXGGGGXXKKXFFFXXXGGGGXXXXXXXXXKPPPXXXXXXXPPP 671
PPP PPP GG GG PPP PPP
Sbjct: 714 PPPPGLPPITGGPPPPPPPGGLPPITGGPPPPPPPGGLPPISGGPPPPPPPPGGCPPPPP 773
Query: 672 PPPXXG 689
PPP G
Sbjct: 774 PPPPGG 779
>AF062008-1|AAC17501.1| 1018|Caenorhabditis elegans unknown protein.
Length = 1018
Score = 32.3 bits (70), Expect = 0.47
Identities = 20/66 (30%), Positives = 20/66 (30%)
Frame = +3
Query: 492 PPPXXKKXFFFXXXPPPXGGGGXXKKXFFFXXXGGGGXXXXXXXXXKPPPXXXXXXXPPP 671
PPP PPP GG GG PPP PPP
Sbjct: 297 PPPPGLPPITGGPPPPPPPGGLPPITGGPPPPPPPGGLPPISGGPPPPPPPPGGCPPPPP 356
Query: 672 PPPXXG 689
PPP G
Sbjct: 357 PPPPGG 362
>AF003151-19|AAK18922.1| 988|Caenorhabditis elegans Hypothetical
protein D1007.7 protein.
Length = 988
Score = 29.9 bits (64), Expect = 2.5
Identities = 11/19 (57%), Positives = 11/19 (57%)
Frame = +1
Query: 634 PPPRGXXXXXPPPPPXXGG 690
PPPRG PPPP GG
Sbjct: 772 PPPRGGMHHMPPPPSFRGG 790
>Z12018-1|CAD88219.2| 774|Caenorhabditis elegans Hypothetical
protein ZK643.8 protein.
Length = 774
Score = 29.5 bits (63), Expect = 3.3
Identities = 16/44 (36%), Positives = 17/44 (38%)
Frame = +3
Query: 546 GGGGXXKKXFFFXXXGGGGXXXXXXXXXKPPPXXXXXXXPPPPP 677
GGGG + GGGG PPP PPPPP
Sbjct: 276 GGGGGGSSGGYAGSSGGGGYSAPAAAPPPPPP-------PPPPP 312
>Z11126-8|CAD88221.2| 774|Caenorhabditis elegans Hypothetical
protein ZK643.8 protein.
Length = 774
Score = 29.5 bits (63), Expect = 3.3
Identities = 16/44 (36%), Positives = 17/44 (38%)
Frame = +3
Query: 546 GGGGXXKKXFFFXXXGGGGXXXXXXXXXKPPPXXXXXXXPPPPP 677
GGGG + GGGG PPP PPPPP
Sbjct: 276 GGGGGGSSGGYAGSSGGGGYSAPAAAPPPPPP-------PPPPP 312
>Z46676-8|CAB60993.2| 388|Caenorhabditis elegans Hypothetical
protein C08B11.5 protein.
Length = 388
Score = 29.1 bits (62), Expect = 4.4
Identities = 10/20 (50%), Positives = 11/20 (55%)
Frame = +3
Query: 630 KPPPXXXXXXXPPPPPPXXG 689
+PPP PPPPPP G
Sbjct: 286 RPPPPPSSGMWPPPPPPPPG 305
>U24189-3|AAC47514.1| 398|Caenorhabditis elegans RRM-type RNA
binding protein protein.
Length = 398
Score = 29.1 bits (62), Expect = 4.4
Identities = 10/20 (50%), Positives = 11/20 (55%)
Frame = +3
Query: 630 KPPPXXXXXXXPPPPPPXXG 689
+PPP PPPPPP G
Sbjct: 296 RPPPPPSSGMWPPPPPPPPG 315
>AL117204-20|CAB55136.2| 699|Caenorhabditis elegans Hypothetical
protein Y116A8C.32 protein.
Length = 699
Score = 29.1 bits (62), Expect = 4.4
Identities = 16/53 (30%), Positives = 18/53 (33%)
Frame = +3
Query: 522 FXXXPPPXGGGGXXKKXFFFXXXGGGGXXXXXXXXXKPPPXXXXXXXPPPPPP 680
F P GG G ++ GG PPP PPPPPP
Sbjct: 632 FYTSPGARGGAGAKANKGWYGSGGGSSMPMPV-----PPPGGLGGFMPPPPPP 679
>AJ243905-1|CAB64866.1| 699|Caenorhabditis elegans SF1 protein
protein.
Length = 699
Score = 29.1 bits (62), Expect = 4.4
Identities = 16/53 (30%), Positives = 18/53 (33%)
Frame = +3
Query: 522 FXXXPPPXGGGGXXKKXFFFXXXGGGGXXXXXXXXXKPPPXXXXXXXPPPPPP 680
F P GG G ++ GG PPP PPPPPP
Sbjct: 632 FYTSPGARGGAGAKANKGWYGSGGGSSMPMPV-----PPPGGLGGFMPPPPPP 679
>AC024798-8|AAK29921.3| 1115|Caenorhabditis elegans Hypothetical
protein Y48G9A.4 protein.
Length = 1115
Score = 28.3 bits (60), Expect = 7.7
Identities = 10/19 (52%), Positives = 10/19 (52%)
Frame = +3
Query: 633 PPPXXXXXXXPPPPPPXXG 689
PPP PPPPPP G
Sbjct: 579 PPPPPPMLGGPPPPPPPPG 597
Score = 28.3 bits (60), Expect = 7.7
Identities = 10/19 (52%), Positives = 10/19 (52%)
Frame = +3
Query: 633 PPPXXXXXXXPPPPPPXXG 689
PPP PPPPPP G
Sbjct: 580 PPPPPMLGGPPPPPPPPGG 598
Database: celegans
Posted date: Oct 23, 2007 1:18 PM
Number of letters in database: 12,740,198
Number of sequences in database: 27,780
Lambda K H
0.318 0.134 0.401
Gapped
Lambda K H
0.279 0.0580 0.190
Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 11,504,806
Number of Sequences: 27780
Number of extensions: 255212
Number of successful extensions: 2217
Number of sequences better than 10.0: 13
Number of HSP's better than 10.0 without gapping: 653
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 1579
length of database: 12,740,198
effective HSP length: 81
effective length of database: 10,490,018
effective search space used: 2213393798
frameshift window, decay const: 40, 0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)
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