Last updated: 2022/11/18
BLASTX 2.2.12 [Aug-07-2005]
Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer,
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997),
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs", Nucleic Acids Res. 25:3389-3402.
Query= BmNP11_T7_G03
(813 letters)
Database: spombe
5004 sequences; 2,362,478 total letters
Searching..................................................done
Score E
Sequences producing significant alignments: (bits) Value
SPAC13G7.02c |ssa1||heat shock protein Ssa1|Schizosaccharomyces ... 188 1e-48
SPCC1739.13 |ssa2||heat shock protein Ssa2|Schizosaccharomyces p... 185 6e-48
SPAC22A12.15c |bip1|bip|BiP |Schizosaccharomyces pombe|chr 1|||M... 134 2e-32
SPAC664.11 |ssc1|ssp1|Hsp70 chaperone mtHsp70|Schizosaccharomyce... 82 1e-16
SPBC1709.05 |sks2|hsc1|heat shock protein Sks2|Schizosaccharomyc... 81 1e-16
SPAC110.04c |pss1|ssp1, SPAP14E8.01c|heat shock protein Pss1|Sch... 36 0.007
SPAC458.02c |||mRNP complex |Schizosaccharomyces pombe|chr 1|||M... 32 0.084
SPCC895.05 |for3||formin For3|Schizosaccharomyces pombe|chr 3|||... 31 0.15
SPBC1734.01c ||SPBC337.17c|RNA-binding protein|Schizosaccharomyc... 31 0.19
SPAC10F6.08c |||HMG box protein|Schizosaccharomyces pombe|chr 1|... 30 0.34
SPCC825.01 |||ribosome biogenesis ATPase, Arb family |Schizosacc... 30 0.34
SPBC29A10.03c |rlf2|SPBC365.19c|chromatin remodeling complex sub... 30 0.34
SPCC162.08c |nup211||nuclear pore complex associated protein|Sch... 30 0.34
SPBC16D10.08c |||heat shock protein Hsp104 |Schizosaccharomyces ... 30 0.45
SPBC16C6.05 |||translation initiation factor |Schizosaccharomyce... 30 0.45
SPCC1235.05c |fft2||fun thirty related protein Fft2|Schizosaccha... 29 0.59
SPCC663.03 |pmd1||leptomycin efflux transporter Pmd1|Schizosacch... 29 0.79
SPAC23H4.15 |||ribosome biogenesis protein Tsr1 |Schizosaccharom... 29 1.0
SPBC15D4.01c ||SPBC2D10.21c|kinesin-like protein|Schizosaccharom... 28 1.8
SPBC16E9.13 |ksp1|ppk20|serine/threonine protein kinase Ksp1 |Sc... 27 2.4
SPAC30D11.08c |phf2|swp2, saf60|PHD finger containing protein Ph... 27 3.2
SPBC16C6.10 |chp2||chromodomain protein 2|Schizosaccharomyces po... 27 3.2
SPBC16A3.11 |eso1||sister chromatid cohesion protein Eso1|Schizo... 27 3.2
SPAC589.02c |med13|spTrap240, srb9|mediator complex subunit Srb9... 27 4.2
SPBC14F5.03c |kap123||karyopherin Kap123|Schizosaccharomyces pom... 27 4.2
SPCC825.02 |||glucosidase II Gtb1 |Schizosaccharomyces pombe|chr... 27 4.2
SPAC1556.01c |rad50|SPAP4C9.01c|DNA repair protein Rad50|Schizos... 27 4.2
SPBC428.10 |||sequence orphan|Schizosaccharomyces pombe|chr 2|||... 26 5.5
SPCC1827.01c |||DUF1253 family protein|Schizosaccharomyces pombe... 26 5.5
SPAC30C2.08 |||conserved fungal protein|Schizosaccharomyces pomb... 26 5.5
SPAC1486.04c |alm1||medial ring protein Alm1|Schizosaccharomyces... 26 5.5
SPBC14F5.02 |||sequence orphan|Schizosaccharomyces pombe|chr 2||... 26 5.5
SPBC23E6.04c |utp10||U3 snoRNP-associated protein Utp10 |Schizos... 26 5.5
SPAC17A2.13c |rad25||14-3-3 protein Rad25|Schizosaccharomyces po... 26 5.5
SPAC4D7.13 |usp104|prp40|U1 snRNP-associated protein Usp104|Schi... 26 5.5
SPBC20F10.07 |||GRAM domain protein|Schizosaccharomyces pombe|ch... 26 7.3
SPAC6G10.04c |||20S proteasome component alpha 6 subunit Pre5|Sc... 26 7.3
SPAC2F7.03c |pom1||DYRK family protein kinase Pom1|Schizosacchar... 26 7.3
SPAC10F6.09c |psm3|smc3|mitotic cohesin complex subunit Psm3|Sch... 26 7.3
SPAC26A3.12c |dhp1||5'-3' exoribonuclease Dhp1 |Schizosaccharomy... 26 7.3
SPBC146.06c |||human MTMR15 homolog|Schizosaccharomyces pombe|ch... 26 7.3
SPAC29E6.10c ||SPAC30.14c|kinetochore protein |Schizosaccharomyc... 25 9.7
SPAC222.06 |mak16||nuclear HMG-like acidic protein Mak16|Schizos... 25 9.7
SPAC23G3.10c |ssr3||SWI/SNF and RSC complex subunit Ssr3|Schizos... 25 9.7
SPAC328.02 |||Ariadne homolog|Schizosaccharomyces pombe|chr 1|||... 25 9.7
SPAC13C5.02 |dre4||DNA replication protein Dre4|Schizosaccharomy... 25 9.7
SPAC22F8.10c |sap145||U2 snRNP-associated protein Sap145 |Schizo... 25 9.7
SPCC962.02c |bir1|cut17, pbh1, SPCP31B10.10c|survivin homolog|Sc... 25 9.7
SPAC23C4.19 |spt5||transcription elongation factor Spt5|Schizosa... 25 9.7
>SPAC13G7.02c |ssa1||heat shock protein Ssa1|Schizosaccharomyces
pombe|chr 1|||Manual
Length = 644
Score = 188 bits (457), Expect = 1e-48
Identities = 98/179 (54%), Positives = 123/179 (68%)
Frame = -2
Query: 755 PGVLIPRI*GVSVX*PKITTWLGKXELTRDSHRRRVACLKLEVTXDXDANGIXNVSAIEK 576
PGVLI G K LGK EL+ R ++EVT D DANGI NVSA+EK
Sbjct: 434 PGVLIQVFEGERAR-TKDCNLLGKFELSGIPPAPR-GVPQIEVTFDVDANGILNVSALEK 491
Query: 575 STNKENKITITNDKGRLSKEEIERMVNEAEKYRNEDDKQKETIQAKNALESYCFSMKSTM 396
T K KITITNDKGRLSKEEI+RMV+EAEKY+ ED+ + IQAKN LESY +S+++++
Sbjct: 492 GTGKTQKITITNDKGRLSKEEIDRMVSEAEKYKAEDEAETSRIQAKNHLESYAYSLRNSL 551
Query: 395 EDEKLKEKISDSDKQTILDKCNDTIKWLDSNQLADKEEYEHKQKELEGICNPIITKMYQ 219
+D LK+K+ SDK+ I +TI+WLD N A K+EYE KQKELEG+ NPI+ K+YQ
Sbjct: 552 DDPNLKDKVDASDKEAIDKAVKETIEWLDHNTTAAKDEYEDKQKELEGVANPIMAKIYQ 610
>SPCC1739.13 |ssa2||heat shock protein Ssa2|Schizosaccharomyces
pombe|chr 3|||Manual
Length = 647
Score = 185 bits (451), Expect = 6e-48
Identities = 97/179 (54%), Positives = 123/179 (68%)
Frame = -2
Query: 755 PGVLIPRI*GVSVX*PKITTWLGKXELTRDSHRRRVACLKLEVTXDXDANGIXNVSAIEK 576
PGVLI G K LGK EL+ R ++EVT D DANGI NVSA+EK
Sbjct: 434 PGVLIQVFEGERAR-TKDCNLLGKFELSGIPPAPR-GVPQIEVTFDVDANGILNVSALEK 491
Query: 575 STNKENKITITNDKGRLSKEEIERMVNEAEKYRNEDDKQKETIQAKNALESYCFSMKSTM 396
T K KITITNDKGRLSKEEI+RMV EAEKY+ ED+ + IQAKN LESY +S+++++
Sbjct: 492 GTGKTQKITITNDKGRLSKEEIDRMVAEAEKYKAEDEAESGRIQAKNHLESYAYSLRNSL 551
Query: 395 EDEKLKEKISDSDKQTILDKCNDTIKWLDSNQLADKEEYEHKQKELEGICNPIITKMYQ 219
+D LK+K+ SDK+T+ +TI+WLDSN A K+E+E KQKELE + NPI+ K+YQ
Sbjct: 552 DDPNLKDKVDASDKETVDKAVKETIEWLDSNTTAAKDEFEAKQKELESVANPIMAKIYQ 610
>SPAC22A12.15c |bip1|bip|BiP |Schizosaccharomyces pombe|chr
1|||Manual
Length = 663
Score = 134 bits (323), Expect = 2e-32
Identities = 65/142 (45%), Positives = 97/142 (68%), Gaps = 3/142 (2%)
Frame = -2
Query: 638 KLEVTXDXDANGIXNVSAIEKS-TNKENKITITNDKGRLSKEEIERMVNEAEKYRNEDDK 462
++EVT + DANG+ VSA++KS K K+ I NDKGRLS+E+IERMV EAE++ ED
Sbjct: 500 QIEVTFEVDANGVLTVSAVDKSGKGKPEKLVIKNDKGRLSEEDIERMVKEAEEFAEEDKI 559
Query: 461 QKETIQAKNALESYCFSMKSTM-EDEKLKEKISDSDKQTILDKCNDTIKWLD-SNQLADK 288
KE I+A+N LE+Y +S+K +DE+L K+ DKQ +LD D +WL+ + A K
Sbjct: 560 LKERIEARNTLENYAYSLKGQFDDDEQLGGKVDPEDKQAVLDAVEDVAEWLEIHGEDASK 619
Query: 287 EEYEHKQKELEGICNPIITKMY 222
EE+E ++++L+ + +PI K+Y
Sbjct: 620 EEFEDQRQKLDAVVHPITQKLY 641
Score = 42.3 bits (95), Expect = 8e-05
Identities = 26/58 (44%), Positives = 30/58 (51%)
Frame = -1
Query: 807 PSPXNRXXPXPTYFDNQPRSTNPKNLRGERXMTKDNNLAR*IXADPGFPPAPRGVPQI 634
P P + T DNQ + + GER +TKDNNL G PPAPRGVPQI
Sbjct: 446 PIPTRKSQIFSTAVDNQ-NTVLIQVYEGERTLTKDNNLLGKFDLR-GIPPAPRGVPQI 501
>SPAC664.11 |ssc1|ssp1|Hsp70 chaperone mtHsp70|Schizosaccharomyces
pombe|chr 1|||Manual
Length = 674
Score = 81.8 bits (193), Expect = 1e-16
Identities = 47/142 (33%), Positives = 79/142 (55%), Gaps = 2/142 (1%)
Frame = -2
Query: 638 KLEVTXDXDANGIXNVSAIEKSTNKENKITITNDKGRLSKEEIERMVNEAEKYRNEDDKQ 459
++EV+ D DA+GI NVSA +K+TNK++ IT+ G L+ EIE MV +AEKYR D +
Sbjct: 514 QIEVSFDVDADGIINVSARDKATNKDSSITVAGSSG-LTDSEIEAMVADAEKYRASDMAR 572
Query: 458 KETIQAKNALESYCFSMKSTME--DEKLKEKISDSDKQTILDKCNDTIKWLDSNQLADKE 285
KE I+ N ES C ++S ++ +KL ++ + + I D K ++ E
Sbjct: 573 KEAIENGNRAESVCTDIESNLDIHKDKLDQQAVEDLRSKITDLRETVAKVNAGDEGITSE 632
Query: 284 EYEHKQKELEGICNPIITKMYQ 219
+ + K E++ + + +Y+
Sbjct: 633 DMKKKIDEIQQLSLKVFESVYK 654
Score = 28.3 bits (60), Expect = 1.4
Identities = 14/32 (43%), Positives = 18/32 (56%)
Frame = -1
Query: 729 RGERXMTKDNNLAR*IXADPGFPPAPRGVPQI 634
+GER + +DN L G PAP+G PQI
Sbjct: 485 QGERELVRDNKLIGNFQLT-GIAPAPKGQPQI 515
>SPBC1709.05 |sks2|hsc1|heat shock protein Sks2|Schizosaccharomyces
pombe|chr 2|||Manual
Length = 613
Score = 81.4 bits (192), Expect = 1e-16
Identities = 40/115 (34%), Positives = 69/115 (60%), Gaps = 3/115 (2%)
Frame = -2
Query: 638 KLEVTXDXDANGIXNVSAIEKSTNKENKITITNDKGRLSKEEIERMVNEAEKYRNEDDKQ 459
+LE T + DANGI V+A+EK+T + I ITN G LS +I+ M+ A+K++ +D
Sbjct: 476 ELEATFELDANGILKVTAVEKTTGRSAHIEITNSVGHLSSTKIQEMIENADKFKQQDKDF 535
Query: 458 KETIQAKNALESYCFSMKSTMEDEKLKEKISDSDKQTI---LDKCNDTIKWLDSN 303
+ ++AK+ LESY ++++T+ + + K+ DK I L +C ++ D+N
Sbjct: 536 AKKLEAKSQLESYISNIETTISEPNVMMKLKRGDKSKIEAQLAECMSQLELEDTN 590
>SPAC110.04c |pss1|ssp1, SPAP14E8.01c|heat shock protein
Pss1|Schizosaccharomyces pombe|chr 1|||Manual
Length = 720
Score = 35.9 bits (79), Expect = 0.007
Identities = 32/118 (27%), Positives = 53/118 (44%), Gaps = 4/118 (3%)
Frame = -2
Query: 578 KSTNKENKITITNDKGRLSKEEIERMVNEAEKYRNEDDKQ-KETIQAKNALESYCFSMKS 402
K K ++++ + RL E +E+ EAE DK ET+ KNALE Y + ++
Sbjct: 534 KKLVKVADLSVSVQEDRLPTEVLEKY-REAEHQMIATDKLVAETVDRKNALEEYIYDTRA 592
Query: 401 TMED--EKLKEKISDSDKQTILDKCNDTIKWL-DSNQLADKEEYEHKQKELEGICNPI 237
++D + S + +L K D WL + + K Y K ++L + PI
Sbjct: 593 KLDDIYAPFTNEEESSKFKEMLTKAED---WLYEEGEDTTKAVYTAKLEDLMRVGGPI 647
>SPAC458.02c |||mRNP complex |Schizosaccharomyces pombe|chr
1|||Manual
Length = 468
Score = 32.3 bits (70), Expect = 0.084
Identities = 15/61 (24%), Positives = 35/61 (57%)
Frame = -2
Query: 518 EEIERMVNEAEKYRNEDDKQKETIQAKNALESYCFSMKSTMEDEKLKEKISDSDKQTILD 339
EE++ +NEA+K NE ++ I+ +L+ +++ +++ + + S KQT+++
Sbjct: 19 EELDAKINEAKKRFNEHKEKLGAIRGGGSLQEKNAELRAELDNIRNAQAAIRSSKQTLIN 78
Query: 338 K 336
K
Sbjct: 79 K 79
>SPCC895.05 |for3||formin For3|Schizosaccharomyces pombe|chr
3|||Manual
Length = 1461
Score = 31.5 bits (68), Expect = 0.15
Identities = 21/73 (28%), Positives = 33/73 (45%)
Frame = -2
Query: 536 KGRLSKEEIERMVNEAEKYRNEDDKQKETIQAKNALESYCFSMKSTMEDEKLKEKISDSD 357
+GR + + N+ E + DDKQ + KN+LE+ M+ + E K D +
Sbjct: 1259 RGRQKTSIVAKYRNKRELPEDSDDKQDTASKDKNSLETIDEKMEDASKIEG-DAKTGDDN 1317
Query: 356 KQTILDKCNDTIK 318
+ LDK D K
Sbjct: 1318 EMEDLDKMEDLEK 1330
>SPBC1734.01c ||SPBC337.17c|RNA-binding protein|Schizosaccharomyces
pombe|chr 2|||Manual
Length = 682
Score = 31.1 bits (67), Expect = 0.19
Identities = 23/69 (33%), Positives = 35/69 (50%)
Frame = -2
Query: 569 NKENKITITNDKGRLSKEEIERMVNEAEKYRNEDDKQKETIQAKNALESYCFSMKSTMED 390
NK+ K T D SKEE+E +V E E D +Q + K+ L++ F ++
Sbjct: 529 NKKGKHTQIEDPTAASKEELENLVREDE----NDSEQLDHFDMKSILKAEKFK-----KN 579
Query: 389 EKLKEKISD 363
KLK+K S+
Sbjct: 580 RKLKKKASN 588
>SPAC10F6.08c |||HMG box protein|Schizosaccharomyces pombe|chr
1|||Manual
Length = 341
Score = 30.3 bits (65), Expect = 0.34
Identities = 29/112 (25%), Positives = 48/112 (42%)
Frame = -2
Query: 590 SAIEKSTNKENKITITNDKGRLSKEEIERMVNEAEKYRNEDDKQKETIQAKNALESYCFS 411
S+I+K K T+ + + E+ + E EK + +A+ A
Sbjct: 206 SSIQKPKLKAEGSTLKGQALKKTLEDTWNNLTEEEKKPYHEGLLAAREKAREARRRRSAQ 265
Query: 410 MKSTMEDEKLKEKISDSDKQTILDKCNDTIKWLDSNQLADKEEYEHKQKELE 255
+ +E EK KEK D D++ DT+ D NQ+ +E E QKE++
Sbjct: 266 NSAKLEKEKAKEKQKDKDQE------QDTVS--DKNQI---DEIEKGQKEVD 306
>SPCC825.01 |||ribosome biogenesis ATPase, Arb family
|Schizosaccharomyces pombe|chr 3|||Manual
Length = 822
Score = 30.3 bits (65), Expect = 0.34
Identities = 26/114 (22%), Positives = 49/114 (42%), Gaps = 3/114 (2%)
Frame = -2
Query: 593 VSAIEKSTNKENKITITNDKGRLSKEEI--ERMVNEAEKYRNEDDKQKETIQAKNALESY 420
V ++K +K++K N + E+ E ++EK ++ K + KNA ++
Sbjct: 70 VVPVKKKPSKKSKKAKANAFEAFADEQSVEEEEEEDSEKPVRKNKKSSKKASPKNAFDAL 129
Query: 419 CFSMKSTMEDEKLKEKISDSDKQTILDKC-NDTIKWLDSNQLADKEEYEHKQKE 261
M DE+ E S K+ K +D + LD + E+ + K+K+
Sbjct: 130 ADDMDDLSLDEEESESSEKSKKKKKKSKSKDDGSEALDDGDIESSEKDKKKKKK 183
>SPBC29A10.03c |rlf2|SPBC365.19c|chromatin remodeling complex
subunit Rlf2 |Schizosaccharomyces pombe|chr 2|||Manual
Length = 544
Score = 30.3 bits (65), Expect = 0.34
Identities = 24/93 (25%), Positives = 47/93 (50%), Gaps = 1/93 (1%)
Frame = -2
Query: 536 KGRLSKEEIERMVNEAEKYRNEDDKQKETIQAKNALESYCFSMKSTMEDEKL-KEKISDS 360
K R +E I + EAE+ + E ++Q+ Q K E + K E EKL KE+I
Sbjct: 82 KQRAQEERIRQ--KEAERLKREKERQQRE-QEKKLREQEKIAAKKMKELEKLEKERIRLQ 138
Query: 359 DKQTILDKCNDTIKWLDSNQLADKEEYEHKQKE 261
++Q ++ + ++ + Q +E+ +K+++
Sbjct: 139 EQQRRKEERDQKLREKEEAQRLRQEQILNKERQ 171
>SPCC162.08c |nup211||nuclear pore complex associated
protein|Schizosaccharomyces pombe|chr 3|||Manual
Length = 1837
Score = 30.3 bits (65), Expect = 0.34
Identities = 23/90 (25%), Positives = 43/90 (47%)
Frame = -2
Query: 524 SKEEIERMVNEAEKYRNEDDKQKETIQAKNALESYCFSMKSTMEDEKLKEKISDSDKQTI 345
+KEE+E +NE + E ++Q + ++N ++ +K +E EKLKE ++ D
Sbjct: 1606 TKEELENQLNEKSQRIKELEEQAQKNSSENTHDNIDDMIKQQVE-EKLKENSANFDV--- 1661
Query: 344 LDKCNDTIKWLDSNQLADKEEYEHKQKELE 255
K + + A YE K ++L+
Sbjct: 1662 --KLKKVVAETEFRSKAKISVYEKKTRDLQ 1689
>SPBC16D10.08c |||heat shock protein Hsp104 |Schizosaccharomyces
pombe|chr 2|||Manual
Length = 905
Score = 29.9 bits (64), Expect = 0.45
Identities = 30/138 (21%), Positives = 57/138 (41%), Gaps = 3/138 (2%)
Frame = -2
Query: 647 ACLKLEVTXDXDANGIXNVSAIEKSTNKENKITITNDKGRLSKEEIERMVNEAEKYRNED 468
A + VT + + N+ + E + + +K SKE ++ EAE+ E
Sbjct: 401 AAAAVRVTRESQPEVLDNLERKLRQLRVEIR-ALEREKDEASKERLKAARKEAEQVEEET 459
Query: 467 DKQKETIQAKNALESYCFSMKSTMEDEKLKEKISDSDKQTILDKCNDTIKWLDSNQLADK 288
+E + + + S K +++ LK K D++++ D +K+ L +
Sbjct: 460 RPIREKYELEKSRGSELQDAKRRLDE--LKAKAEDAERRNDFTLAAD-LKYYGIPDLQKR 516
Query: 287 EEYEHKQK---ELEGICN 243
EY +QK + E I N
Sbjct: 517 IEYLEQQKRKADAEAIAN 534
>SPBC16C6.05 |||translation initiation factor |Schizosaccharomyces
pombe|chr 2|||Manual
Length = 190
Score = 29.9 bits (64), Expect = 0.45
Identities = 23/85 (27%), Positives = 37/85 (43%), Gaps = 2/85 (2%)
Frame = -2
Query: 680 ELTRDSHRRRVACLKLEVTXDXDANGIXNVSAIEKSTNKENKITITNDKGRLSKEEIERM 501
E + SH L E D NVS + S +E +T ++ R+ +EE +RM
Sbjct: 36 EWLKSSHPDVYDKLYGEQDLSKDLENTLNVSGTKDSNAEEQPAKLTKEEKRVEREEAKRM 95
Query: 500 VNEAEKYRNEDDKQKE--TIQAKNA 432
++ E K+K T+Q +A
Sbjct: 96 ASKVLIKTIERTKRKRVTTVQGLDA 120
>SPCC1235.05c |fft2||fun thirty related protein
Fft2|Schizosaccharomyces pombe|chr 3|||Manual
Length = 1284
Score = 29.5 bits (63), Expect = 0.59
Identities = 22/107 (20%), Positives = 48/107 (44%), Gaps = 7/107 (6%)
Frame = -2
Query: 584 IEKSTNKENKITITNDKGRLSK-EEIERMVNEAEKYRNEDDKQKETIQAKNAL------E 426
IE EN++ I N L K +++ R ++ +N+++ +++ A + L
Sbjct: 793 IEHCKLSENQLEIYNRYAALQKNQQLRRDDKRNKRSKNDEESDGKSLSAGHVLMQLRKAA 852
Query: 425 SYCFSMKSTMEDEKLKEKISDSDKQTILDKCNDTIKWLDSNQLADKE 285
++ + +DEKLK+ D ++ N+ + D ++D E
Sbjct: 853 NHALLFRKFYDDEKLKQMAKDIMQEEQYKNANEQYIYEDMEVMSDFE 899
>SPCC663.03 |pmd1||leptomycin efflux transporter
Pmd1|Schizosaccharomyces pombe|chr 3|||Manual
Length = 1362
Score = 29.1 bits (62), Expect = 0.79
Identities = 14/24 (58%), Positives = 16/24 (66%)
Frame = -2
Query: 536 KGRLSKEEIERMVNEAEKYRNEDD 465
KG LSKEE+ER V +A K N D
Sbjct: 525 KGTLSKEELERRVYDAAKLANAYD 548
>SPAC23H4.15 |||ribosome biogenesis protein Tsr1
|Schizosaccharomyces pombe|chr 1|||Manual
Length = 783
Score = 28.7 bits (61), Expect = 1.0
Identities = 15/43 (34%), Positives = 24/43 (55%), Gaps = 1/43 (2%)
Frame = -2
Query: 380 KEKISDSDKQTILD-KCNDTIKWLDSNQLADKEEYEHKQKELE 255
+EKI +++TI D K + + ++ EEY KQKEL+
Sbjct: 427 EEKIDSDEEETIDDAKSEMFVDLSEEEEVRQYEEYRKKQKELQ 469
>SPBC15D4.01c ||SPBC2D10.21c|kinesin-like
protein|Schizosaccharomyces pombe|chr 2|||Manual
Length = 633
Score = 27.9 bits (59), Expect = 1.8
Identities = 17/86 (19%), Positives = 43/86 (50%), Gaps = 1/86 (1%)
Frame = -2
Query: 518 EEIERMVNEAEKYRNEDDKQKETI-QAKNALESYCFSMKSTMEDEKLKEKISDSDKQTIL 342
+++E+M +K ++E+ ++ ETI Q + +E ++S +E+E +KE + +
Sbjct: 491 QKLEKMGGWMKKLQDENSEKTETIAQLEQIIEELHEELRS-LEEESIKESSATQQNENQH 549
Query: 341 DKCNDTIKWLDSNQLADKEEYEHKQK 264
+ + + + D + + K+K
Sbjct: 550 KRSSRKLLYEDKQAIQEAHTINTKRK 575
>SPBC16E9.13 |ksp1|ppk20|serine/threonine protein kinase Ksp1
|Schizosaccharomyces pombe|chr 2|||Manual
Length = 474
Score = 27.5 bits (58), Expect = 2.4
Identities = 14/42 (33%), Positives = 21/42 (50%)
Frame = -2
Query: 593 VSAIEKSTNKENKITITNDKGRLSKEEIERMVNEAEKYRNED 468
VS ++S K + + K EE+E VNE E++R D
Sbjct: 259 VSPEKRSLAKTREAVLAVTKWTTDDEELESFVNEEEEFRASD 300
>SPAC30D11.08c |phf2|swp2, saf60|PHD finger containing protein
Phf2|Schizosaccharomyces pombe|chr 1|||Manual
Length = 538
Score = 27.1 bits (57), Expect = 3.2
Identities = 20/85 (23%), Positives = 43/85 (50%), Gaps = 1/85 (1%)
Frame = -2
Query: 608 NGIXNVSAIEK-STNKENKITITNDKGRLSKEEIERMVNEAEKYRNEDDKQKETIQAKNA 432
NG + S K ST+ + + DK + E+I + ++Y NED+ + +++ A
Sbjct: 375 NGTESQSKTTKHSTSLPSTEPVEVDKQYMESEKIPTIDEYLQEYSNEDEIVLQVLESFPA 434
Query: 431 LESYCFSMKSTMEDEKLKEKISDSD 357
S+ ++ +T++ + KI +S+
Sbjct: 435 AVSFS-TITNTIQAKYSNRKIKNSN 458
>SPBC16C6.10 |chp2||chromodomain protein 2|Schizosaccharomyces
pombe|chr 2|||Manual
Length = 380
Score = 27.1 bits (57), Expect = 3.2
Identities = 19/79 (24%), Positives = 34/79 (43%)
Frame = -2
Query: 554 ITITNDKGRLSKEEIERMVNEAEKYRNEDDKQKETIQAKNALESYCFSMKSTMEDEKLKE 375
I +T + R S E V + E ++D + +++NA + S + + +KE
Sbjct: 240 IRLTRSRARSSNEA--SYVEKDESSNSDDSISYKRRRSRNAANRITDYVDSDLSESSMKE 297
Query: 374 KISDSDKQTILDKCNDTIK 318
K S +K DK + K
Sbjct: 298 KQSKIEKYMKSDKSSKNFK 316
>SPBC16A3.11 |eso1||sister chromatid cohesion protein
Eso1|Schizosaccharomyces pombe|chr 2|||Manual
Length = 872
Score = 27.1 bits (57), Expect = 3.2
Identities = 14/35 (40%), Positives = 22/35 (62%)
Frame = -2
Query: 503 MVNEAEKYRNEDDKQKETIQAKNALESYCFSMKST 399
M+++ RN+ +KQ TI KNA++ Y S+K T
Sbjct: 247 MLSKLVSSRNKPNKQ--TILTKNAIQDYLVSLKIT 279
>SPAC589.02c |med13|spTrap240, srb9|mediator complex subunit
Srb9|Schizosaccharomyces pombe|chr 1|||Manual
Length = 1223
Score = 26.6 bits (56), Expect = 4.2
Identities = 21/88 (23%), Positives = 35/88 (39%)
Frame = -2
Query: 500 VNEAEKYRNEDDKQKETIQAKNALESYCFSMKSTMEDEKLKEKISDSDKQTILDKCNDTI 321
+NE + Y + + Q +T + L S C + S L + D + +L C I
Sbjct: 830 INETDNYDDNETTQSDTATSYEQLASVCVNELS--GKNVLFFYFLEDDSEKLLKACQHFI 887
Query: 320 KWLDSNQLADKEEYEHKQKELEGICNPI 237
DS + ++E K + I N I
Sbjct: 888 CVKDSIKRLGDNKFEDKSLRICTIPNSI 915
>SPBC14F5.03c |kap123||karyopherin Kap123|Schizosaccharomyces
pombe|chr 2|||Manual
Length = 1067
Score = 26.6 bits (56), Expect = 4.2
Identities = 13/54 (24%), Positives = 28/54 (51%)
Frame = -2
Query: 593 VSAIEKSTNKENKITITNDKGRLSKEEIERMVNEAEKYRNEDDKQKETIQAKNA 432
V A+ KS +++ ++ G + EEI ++++ E E+D++ E N+
Sbjct: 597 VPALFKSIDQDESDILSERIGAPTAEEISQLLDSVETNEEENDEELEKAMGVNS 650
>SPCC825.02 |||glucosidase II Gtb1 |Schizosaccharomyces pombe|chr
3|||Manual
Length = 506
Score = 26.6 bits (56), Expect = 4.2
Identities = 15/54 (27%), Positives = 29/54 (53%)
Frame = -2
Query: 473 EDDKQKETIQAKNALESYCFSMKSTMEDEKLKEKISDSDKQTILDKCNDTIKWL 312
E DK ET+ K A+ S+ +++++++ K+S D L+ CN+ + L
Sbjct: 242 ETDKFDETM--KEAILSF-----EDLKEQEIRRKVSSDDVHNYLESCNNHLSML 288
>SPAC1556.01c |rad50|SPAP4C9.01c|DNA repair protein
Rad50|Schizosaccharomyces pombe|chr 1|||Manual
Length = 1290
Score = 26.6 bits (56), Expect = 4.2
Identities = 17/58 (29%), Positives = 34/58 (58%), Gaps = 1/58 (1%)
Frame = -2
Query: 563 ENKITITNDKGRLSKEEIERM-VNEAEKYRNEDDKQKETIQAKNALESYCFSMKSTME 393
++++TIT++ S E++E++ N AEK + E + K + ++ LES S + +E
Sbjct: 288 KSQMTITDE----SSEDLEKLHSNFAEKVKEEQELYKSLEKKRSDLESLLKSRRELLE 341
>SPBC428.10 |||sequence orphan|Schizosaccharomyces pombe|chr
2|||Manual
Length = 751
Score = 26.2 bits (55), Expect = 5.5
Identities = 22/74 (29%), Positives = 32/74 (43%), Gaps = 9/74 (12%)
Frame = -2
Query: 521 KEEIERMVNEAEKYRNEDD---------KQKETIQAKNALESYCFSMKSTMEDEKLKEKI 369
KE ER+ E + NED K+K IQ KN+ + + ST E K+ I
Sbjct: 487 KETPERLCTENQSTENEDQANLKESELPKEKSDIQPKNSRSTIEYIETSTRVYEMPKDTI 546
Query: 368 SDSDKQTILDKCND 327
K +I + +D
Sbjct: 547 PSRFKTSISTEVHD 560
>SPCC1827.01c |||DUF1253 family protein|Schizosaccharomyces
pombe|chr 3|||Manual
Length = 652
Score = 26.2 bits (55), Expect = 5.5
Identities = 21/76 (27%), Positives = 35/76 (46%)
Frame = -2
Query: 581 EKSTNKENKITITNDKGRLSKEEIERMVNEAEKYRNEDDKQKETIQAKNALESYCFSMKS 402
EK +KE K ++ + E V ++ NE+D+Q E IQ Y +++S
Sbjct: 36 EKKDDKEKSSKKVQKKNKVIESLNEMEVEMEDENENENDEQ-EAIQ-------YYINVES 87
Query: 401 TMEDEKLKEKISDSDK 354
DE L ++ DS +
Sbjct: 88 QDADETLHQEAQDSSE 103
>SPAC30C2.08 |||conserved fungal protein|Schizosaccharomyces
pombe|chr 1|||Manual
Length = 457
Score = 26.2 bits (55), Expect = 5.5
Identities = 17/57 (29%), Positives = 27/57 (47%)
Frame = -2
Query: 518 EEIERMVNEAEKYRNEDDKQKETIQAKNALESYCFSMKSTMEDEKLKEKISDSDKQT 348
+EIE M + + + D + + N + CFS +ED K KE +SD K +
Sbjct: 215 KEIEEMKDSNGMFCDADHVPLQGQELCNGILEECFSF---LEDAKTKEGLSDEMKSS 268
>SPAC1486.04c |alm1||medial ring protein Alm1|Schizosaccharomyces
pombe|chr 1|||Manual
Length = 1727
Score = 26.2 bits (55), Expect = 5.5
Identities = 17/66 (25%), Positives = 35/66 (53%), Gaps = 1/66 (1%)
Frame = -2
Query: 542 NDKGRLSKEEIERMVNEAEKYRNEDDKQKETIQAKNA-LESYCFSMKSTMEDEKLKEKIS 366
+DK + E + E YRNE +E++ +N L S +++ +E+ K ++++S
Sbjct: 635 DDKMKSIDESTRELEKNYEVYRNEMTAIQESLSKRNQDLLSEMEAIRKELENSKYQQQLS 694
Query: 365 DSDKQT 348
+D+ T
Sbjct: 695 -TDRLT 699
Score = 26.2 bits (55), Expect = 5.5
Identities = 22/93 (23%), Positives = 45/93 (48%), Gaps = 3/93 (3%)
Frame = -2
Query: 530 RLSKEEIERMVNEAEKYRNEDDKQKETIQAK-NALESYCFSMKSTMEDEKLKEKISDSDK 354
+L++E +ER+ E ++YR + + E K +LE ++ + L+ + D
Sbjct: 950 KLAEEMVERVKTEYDEYRLQTSESLEKNHLKITSLEQRIVILQDEIASSSLRCENITKDS 1009
Query: 353 QTILDKCNDTIKWLDSNQLAD--KEEYEHKQKE 261
+T + + K L +N+L+ E +H +KE
Sbjct: 1010 ETRVALLLEENKHL-NNELSSHRNAEKQHLEKE 1041
>SPBC14F5.02 |||sequence orphan|Schizosaccharomyces pombe|chr
2|||Manual
Length = 515
Score = 26.2 bits (55), Expect = 5.5
Identities = 21/60 (35%), Positives = 30/60 (50%)
Frame = +1
Query: 571 VDFSIAETLXIPLASMSKVTSNLRHATRRRWESRVSSNLPSQVVIFGHXTLTPQILGIST 750
+DFSI + IPL +N H+T + E SS L GH T++P I+ +ST
Sbjct: 405 LDFSIDLLIRIPLYCYDDCLTNKEHSTSKSEEK--SSELLKYP--NGH-TISPGIIALST 459
>SPBC23E6.04c |utp10||U3 snoRNP-associated protein Utp10
|Schizosaccharomyces pombe|chr 2|||Manual
Length = 1649
Score = 26.2 bits (55), Expect = 5.5
Identities = 24/75 (32%), Positives = 35/75 (46%), Gaps = 1/75 (1%)
Frame = -2
Query: 554 ITITND-KGRLSKEEIERMVNEAEKYRNEDDKQKETIQAKNALESYCFSMKSTMEDEKLK 378
I + D K S I V + E+ + D T+Q K +S FS K + E L
Sbjct: 383 IPVNQDFKALQSYRRILDSVIQPERKEGKLDNLINTLQDKK--KSSTFSKK---DREVLL 437
Query: 377 EKISDSDKQTILDKC 333
+KIS+ D QT ++C
Sbjct: 438 KKISEIDSQTSFEQC 452
>SPAC17A2.13c |rad25||14-3-3 protein Rad25|Schizosaccharomyces
pombe|chr 1|||Manual
Length = 270
Score = 26.2 bits (55), Expect = 5.5
Identities = 10/18 (55%), Positives = 12/18 (66%)
Frame = -3
Query: 211 EESPEVCRASRAEHPEPE 158
EE+P AS EHPEP+
Sbjct: 244 EEAPAAAAASENEHPEPK 261
>SPAC4D7.13 |usp104|prp40|U1 snRNP-associated protein
Usp104|Schizosaccharomyces pombe|chr 1|||Manual
Length = 695
Score = 26.2 bits (55), Expect = 5.5
Identities = 12/41 (29%), Positives = 25/41 (60%)
Frame = -2
Query: 524 SKEEIERMVNEAEKYRNEDDKQKETIQAKNALESYCFSMKS 402
S+ E +++ E ++ ED+KQ E + K AL+ +C +++
Sbjct: 299 SETEQQQLFFEYKQKLLEDEKQLEKDRRKEALDDFCSLLRN 339
>SPBC20F10.07 |||GRAM domain protein|Schizosaccharomyces pombe|chr
2|||Manual
Length = 764
Score = 25.8 bits (54), Expect = 7.3
Identities = 12/37 (32%), Positives = 17/37 (45%)
Frame = -2
Query: 536 KGRLSKEEIERMVNEAEKYRNEDDKQKETIQAKNALE 426
+G L E E NEA++ NE+ E +N E
Sbjct: 89 EGELKLENFENQENEADEAENEETSYSEQNHTENTEE 125
>SPAC6G10.04c |||20S proteasome component alpha 6 subunit
Pre5|Schizosaccharomyces pombe|chr 1|||Manual
Length = 272
Score = 25.8 bits (54), Expect = 7.3
Identities = 20/62 (32%), Positives = 29/62 (46%), Gaps = 1/62 (1%)
Frame = -2
Query: 470 DDKQKETI-QAKNALESYCFSMKSTMEDEKLKEKISDSDKQTILDKCNDTIKWLDSNQLA 294
D ++E I A AL + E+ I +K T+ D+ NDT +WLD +L
Sbjct: 181 DSSREELILSALRALRDTLSKDQELTEENVSISVIGKDEKYTLYDQ-NDTKEWLD--KLG 237
Query: 293 DK 288
DK
Sbjct: 238 DK 239
>SPAC2F7.03c |pom1||DYRK family protein kinase
Pom1|Schizosaccharomyces pombe|chr 1|||Manual
Length = 1087
Score = 25.8 bits (54), Expect = 7.3
Identities = 14/47 (29%), Positives = 23/47 (48%)
Frame = -2
Query: 608 NGIXNVSAIEKSTNKENKITITNDKGRLSKEEIERMVNEAEKYRNED 468
N + N S +KS+NKE + + RLS + + K ++ED
Sbjct: 409 NTVQNESKSQKSSNKEGRSSRGGFFSRLSFSRSSSRMKKGSKAKHED 455
>SPAC10F6.09c |psm3|smc3|mitotic cohesin complex subunit
Psm3|Schizosaccharomyces pombe|chr 1|||Manual
Length = 1194
Score = 25.8 bits (54), Expect = 7.3
Identities = 21/77 (27%), Positives = 40/77 (51%), Gaps = 1/77 (1%)
Frame = -2
Query: 680 ELTRDSHRRRVACLKLEVTXDXDANGIXNVSAIEKSTNK-ENKITITNDKGRLSKEEIER 504
EL + + RR LK E+ D + ++++++S K ENK+ I +E+++R
Sbjct: 820 ELNTNLYLRRNP-LKAEIGSDNRIDE-SELNSVKRSLLKYENKLQIIKSSSSGLEEQMQR 877
Query: 503 MVNEAEKYRNEDDKQKE 453
+ +E RNE + +E
Sbjct: 878 INSEISDKRNELESLEE 894
>SPAC26A3.12c |dhp1||5'-3' exoribonuclease Dhp1 |Schizosaccharomyces
pombe|chr 1|||Manual
Length = 991
Score = 25.8 bits (54), Expect = 7.3
Identities = 13/61 (21%), Positives = 31/61 (50%)
Frame = -2
Query: 521 KEEIERMVNEAEKYRNEDDKQKETIQAKNALESYCFSMKSTMEDEKLKEKISDSDKQTIL 342
+++I + + + E RNE+ ++++ ++ ESY ++ E ++ S K T +
Sbjct: 391 EDDIFKRLKQQEDRRNENYRRRQQRESNQESESYVDNVVIQRSVETQSTEVVTSSKSTSV 450
Query: 341 D 339
D
Sbjct: 451 D 451
>SPBC146.06c |||human MTMR15 homolog|Schizosaccharomyces pombe|chr
2|||Manual
Length = 703
Score = 25.8 bits (54), Expect = 7.3
Identities = 18/56 (32%), Positives = 27/56 (48%), Gaps = 2/56 (3%)
Frame = -2
Query: 575 STNKENKITITNDKGRLSKEEIERMVNEAEKYRNEDDKQK--ETIQAKNALESYCF 414
+TNK N + N L EEI V + E + DD+ + E +A ++ E Y F
Sbjct: 46 NTNKHNVYSTKNSMYLLGFEEILNTVLDCEPHIFTDDELRVIENFKALDSDERYLF 101
>SPAC29E6.10c ||SPAC30.14c|kinetochore protein |Schizosaccharomyces
pombe|chr 1|||Manual
Length = 1085
Score = 25.4 bits (53), Expect = 9.7
Identities = 14/63 (22%), Positives = 29/63 (46%)
Frame = -2
Query: 521 KEEIERMVNEAEKYRNEDDKQKETIQAKNALESYCFSMKSTMEDEKLKEKISDSDKQTIL 342
+EE E+ + E K R + DK++E + + LE + + + K+ + + +
Sbjct: 694 REEEEKRILEERKRREKLDKEEEERRRRELLEKESEEKERRLREAKIAAFFAPNQTKEGS 753
Query: 341 DKC 333
D C
Sbjct: 754 DGC 756
>SPAC222.06 |mak16||nuclear HMG-like acidic protein
Mak16|Schizosaccharomyces pombe|chr 1|||Manual
Length = 302
Score = 25.4 bits (53), Expect = 9.7
Identities = 19/70 (27%), Positives = 35/70 (50%), Gaps = 1/70 (1%)
Frame = -2
Query: 560 NKITITNDKGRLSKEEIERMVNEAE-KYRNEDDKQKETIQAKNALESYCFSMKSTMEDEK 384
NK+ + G + + E E EAE ++ ++D+ ++E ++ L S S E+E+
Sbjct: 187 NKVLAARE-GLIDEGEEEEEREEAELEFVSDDEDEEEISDLEDWLGSDQSMETSESEEEE 245
Query: 383 LKEKISDSDK 354
E SD D+
Sbjct: 246 SSESESDEDE 255
>SPAC23G3.10c |ssr3||SWI/SNF and RSC complex subunit
Ssr3|Schizosaccharomyces pombe|chr 1|||Manual
Length = 425
Score = 25.4 bits (53), Expect = 9.7
Identities = 28/95 (29%), Positives = 44/95 (46%), Gaps = 6/95 (6%)
Frame = -2
Query: 596 NVS--AIEKSTNKENKITITNDKGRLSKEEIERMVNEAEKYRNEDDKQKETIQAKNALES 423
NVS +EK T + +I + + + + M+++ +K R+ DDK E IQA +S
Sbjct: 289 NVSEHTVEKVTIFDIRINTEDPRHSQIRSFLATMMSQ-DKIRSIDDKLTELIQAITYSQS 347
Query: 422 YCFSMKSTMED--EKLKEKISDS--DKQTILDKCN 330
MK E E + E I D + +LD N
Sbjct: 348 KYDFMKKFSESPIEFINEWIESQSRDLEIVLDGTN 382
>SPAC328.02 |||Ariadne homolog|Schizosaccharomyces pombe|chr
1|||Manual
Length = 504
Score = 25.4 bits (53), Expect = 9.7
Identities = 12/28 (42%), Positives = 15/28 (53%), Gaps = 1/28 (3%)
Frame = +2
Query: 200 RGLLRHPGTSSLLSDCKCLPILSA-CAH 280
R ++ H GT + D CLP SA C H
Sbjct: 122 REVVHHEGTCEICYDEGCLPFFSAECDH 149
>SPAC13C5.02 |dre4||DNA replication protein Dre4|Schizosaccharomyces
pombe|chr 1|||Manual
Length = 411
Score = 25.4 bits (53), Expect = 9.7
Identities = 14/42 (33%), Positives = 20/42 (47%)
Frame = -2
Query: 440 KNALESYCFSMKSTMEDEKLKEKISDSDKQTILDKCNDTIKW 315
K E YC S+ ST + + K +SD T+L T+ W
Sbjct: 284 KEVFEEYCKSVVSTKKITRRKNTLSDF--WTLLHSLPSTLLW 323
>SPAC22F8.10c |sap145||U2 snRNP-associated protein Sap145
|Schizosaccharomyces pombe|chr 1|||Manual
Length = 601
Score = 25.4 bits (53), Expect = 9.7
Identities = 14/43 (32%), Positives = 23/43 (53%)
Frame = -2
Query: 578 KSTNKENKITITNDKGRLSKEEIERMVNEAEKYRNEDDKQKET 450
K NK+++ + +K +L +E+ AEK N DDK + T
Sbjct: 39 KQKNKKSRNQVRREKKKLLREKTNSGAKLAEK--NSDDKDQLT 79
>SPCC962.02c |bir1|cut17, pbh1, SPCP31B10.10c|survivin
homolog|Schizosaccharomyces pombe|chr 3|||Manual
Length = 997
Score = 25.4 bits (53), Expect = 9.7
Identities = 29/118 (24%), Positives = 49/118 (41%), Gaps = 14/118 (11%)
Frame = -2
Query: 638 KLEVTXDXDANGIXNVSAIEKSTNKENKITITN-DKGRLSKEEIERMVNEAEKYR-NEDD 465
K E +AN V + S + + + + G K+ +R V +EK EDD
Sbjct: 693 KSENVNHEEANSGHTVMNVHSSLDPQPIVQPNELESGSYLKDLPDRNVGNSEKVTFQEDD 752
Query: 464 --------KQKETIQAKNALESYCFSMKSTMED----EKLKEKISDSDKQTILDKCND 327
K +T++A N S K + EK++EK+++ DK ++ D D
Sbjct: 753 INSPKLQSKNNQTVEAVNTETSDKLQEKEANHELENIEKIEEKLTEVDKVSLSDAFPD 810
>SPAC23C4.19 |spt5||transcription elongation factor
Spt5|Schizosaccharomyces pombe|chr 1|||Manual
Length = 990
Score = 25.4 bits (53), Expect = 9.7
Identities = 23/120 (19%), Positives = 53/120 (44%)
Frame = -2
Query: 620 DXDANGIXNVSAIEKSTNKENKITITNDKGRLSKEEIERMVNEAEKYRNEDDKQKETIQA 441
D DAN V A E+ + I + + + ++ +EA K ++KQ + +
Sbjct: 10 DKDANST-EVDAAEQDAAS---VKINSTRASPNGSDLLNDDSEAAKITT-NEKQSSPVDS 64
Query: 440 KNALESYCFSMKSTMEDEKLKEKISDSDKQTILDKCNDTIKWLDSNQLADKEEYEHKQKE 261
N + K +E + ++++DK+ D + + D+N+ +++E + ++ E
Sbjct: 65 HNESPNDTTINKGEDGNENEVDNVNNNDKKEDEDNVEENEEEADANEEEEEDEEDDEEDE 124
Database: spombe
Posted date: Oct 4, 2007 10:57 AM
Number of letters in database: 2,362,478
Number of sequences in database: 5004
Lambda K H
0.318 0.134 0.401
Gapped
Lambda K H
0.279 0.0580 0.190
Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 2,790,334
Number of Sequences: 5004
Number of extensions: 53467
Number of successful extensions: 272
Number of sequences better than 10.0: 49
Number of HSP's better than 10.0 without gapping: 244
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 262
length of database: 2,362,478
effective HSP length: 72
effective length of database: 2,002,190
effective search space used: 396433620
frameshift window, decay const: 40, 0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)
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