Bombyx BLAST Result against spombe

BLASTX 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= BmNP11_T7_F24
         (890 letters)

Database: spombe 
           5004 sequences; 2,362,478 total letters

Searching..................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

SPBC2D10.10c |fib1|fib|fibrillarin|Schizosaccharomyces pombe|chr...    32   0.13 
SPBC20F10.01 |gar1|SPBC25H2.01c|snoRNP pseudouridylase complex p...    31   0.22 
SPAC25G10.09c ||SPAC27F1.01c|actin cortical patch component, wit...    29   0.67 
SPBC660.06 |||conserved fungal protein|Schizosaccharomyces pombe...    28   2.1  
SPAC4F8.08 |mug114||sequence orphan|Schizosaccharomyces pombe|ch...    27   3.6  
SPAC4F10.15c |wsp1||WASp homolog|Schizosaccharomyces pombe|chr 1...    27   3.6  
SPCC895.05 |for3||formin For3|Schizosaccharomyces pombe|chr 3|||...    27   3.6  
SPAC4F8.12c |spp42|cwf6|U5 snRNP complex subunit Spp42|Schizosac...    26   8.3  

>SPBC2D10.10c |fib1|fib|fibrillarin|Schizosaccharomyces pombe|chr
           2|||Manual
          Length = 305

 Score = 31.9 bits (69), Expect = 0.13
 Identities = 16/38 (42%), Positives = 16/38 (42%)
 Frame = -3

Query: 720 GXXXGGXXAEGGGGXXGXXXRGGXXGGTXGGXXGGXGG 607
           G   GG     GG       RGG  GG  GG  GG GG
Sbjct: 12  GGSRGGRGGFNGGRGGFGGGRGGARGGGRGGARGGRGG 49



 Score = 31.1 bits (67), Expect = 0.22
 Identities = 15/38 (39%), Positives = 15/38 (39%)
 Frame = -3

Query: 720 GXXXGGXXAEGGGGXXGXXXRGGXXGGTXGGXXGGXGG 607
           G   GG     GGG  G     G  GG  GG  G  GG
Sbjct: 26  GGFGGGRGGARGGGRGGARGGRGGRGGARGGRGGSSGG 63



 Score = 31.1 bits (67), Expect = 0.22
 Identities = 18/39 (46%), Positives = 18/39 (46%), Gaps = 1/39 (2%)
 Frame = -3

Query: 720 GXXXGGXXAEG-GGGXXGXXXRGGXXGGTXGGXXGGXGG 607
           G   GG    G GG   G   RGG  GG  GG  GG GG
Sbjct: 29  GGGRGGARGGGRGGARGGRGGRGGARGG-RGGSSGGRGG 66



 Score = 28.7 bits (61), Expect = 1.2
 Identities = 16/38 (42%), Positives = 16/38 (42%)
 Frame = -3

Query: 720 GXXXGGXXAEGGGGXXGXXXRGGXXGGTXGGXXGGXGG 607
           G   G     GG G      RGG  GG  GG  GG GG
Sbjct: 16  GGRGGFNGGRGGFGGGRGGARGGGRGGARGG-RGGRGG 52


>SPBC20F10.01 |gar1|SPBC25H2.01c|snoRNP pseudouridylase complex
           protein Gar1 |Schizosaccharomyces pombe|chr 2|||Manual
          Length = 194

 Score = 31.1 bits (67), Expect = 0.22
 Identities = 21/58 (36%), Positives = 23/58 (39%), Gaps = 1/58 (1%)
 Frame = -3

Query: 789 GRXXRXGXXXX-GXXPGXXXXSXXGXXXGGXXAEGGGGXXGXXXRGGXXGGTXGGXXG 619
           GR  R G     G   G    +  G   GG     GGG  G   RGG  GG+ GG  G
Sbjct: 136 GRGGRGGFRGGRGGSRGGFGGNSRGGFGGGSRGGFGGGSRGGS-RGGFRGGSRGGFRG 192



 Score = 30.7 bits (66), Expect = 0.29
 Identities = 18/50 (36%), Positives = 19/50 (38%)
 Frame = -3

Query: 756 GXXPGXXXXSXXGXXXGGXXAEGGGGXXGXXXRGGXXGGTXGGXXGGXGG 607
           G   G       G   GG     GG   G   RGG  GG+ GG  GG  G
Sbjct: 129 GARNGPAGRGGRGGFRGGRGGSRGG--FGGNSRGGFGGGSRGGFGGGSRG 176



 Score = 30.7 bits (66), Expect = 0.29
 Identities = 16/38 (42%), Positives = 17/38 (44%)
 Frame = -3

Query: 720 GXXXGGXXAEGGGGXXGXXXRGGXXGGTXGGXXGGXGG 607
           G   GG      GG  G   RGG  GG+ GG  GG  G
Sbjct: 148 GGSRGGFGGNSRGGFGGGS-RGGFGGGSRGGSRGGFRG 184


>SPAC25G10.09c ||SPAC27F1.01c|actin cortical patch component, with EF
            hand and WH2 motif |Schizosaccharomyces pombe|chr
            1|||Manual
          Length = 1794

 Score = 29.5 bits (63), Expect = 0.67
 Identities = 11/26 (42%), Positives = 11/26 (42%)
 Frame = +1

Query: 610  PXXAPXXPXXPPXPPXPXXXPXPPXP 687
            P   P  P  PP P  P   P PP P
Sbjct: 1711 PMSVPPPPSAPPMPAGPPSAPPPPLP 1736


>SPBC660.06 |||conserved fungal protein|Schizosaccharomyces
           pombe|chr 2|||Manual
          Length = 273

 Score = 27.9 bits (59), Expect = 2.1
 Identities = 12/28 (42%), Positives = 13/28 (46%)
 Frame = -1

Query: 686 GXGGWGXXXGXGGXGGXXGXXGAXXGXP 603
           G GG+G   G GG G   G  G   G P
Sbjct: 203 GPGGFGGFGGFGGEGHHHGGHGGFGGGP 230


>SPAC4F8.08 |mug114||sequence orphan|Schizosaccharomyces pombe|chr
           1|||Manual
          Length = 151

 Score = 27.1 bits (57), Expect = 3.6
 Identities = 10/26 (38%), Positives = 15/26 (57%)
 Frame = -2

Query: 112 KIWLRXSRFPARXLRVSLRGAPSLXA 35
           K+W R   F  + L+++  GAP L A
Sbjct: 20  KVWARAGYFKCKLLKITTTGAPCLFA 45


>SPAC4F10.15c |wsp1||WASp homolog|Schizosaccharomyces pombe|chr
           1|||Manual
          Length = 574

 Score = 27.1 bits (57), Expect = 3.6
 Identities = 9/16 (56%), Positives = 9/16 (56%)
 Frame = +2

Query: 611 PXPPXXPPXVPPHXPP 658
           P PP  PP  PP  PP
Sbjct: 418 PTPPSLPPSAPPSLPP 433



 Score = 27.1 bits (57), Expect = 3.6
 Identities = 9/17 (52%), Positives = 10/17 (58%)
 Frame = +2

Query: 608 PPXPPXXPPXVPPHXPP 658
           P  PP  PP +PP  PP
Sbjct: 421 PSLPPSAPPSLPPSAPP 437



 Score = 25.8 bits (54), Expect = 8.3
 Identities = 12/29 (41%), Positives = 12/29 (41%), Gaps = 1/29 (3%)
 Frame = +1

Query: 604 GXPXXAPXXPXXPPXPPXPXXXP-XPPXP 687
           G P   P  P  P  PP P   P  PP P
Sbjct: 442 GAPAAPPLPPSAPIAPPLPAGMPAAPPLP 470


>SPCC895.05 |for3||formin For3|Schizosaccharomyces pombe|chr
           3|||Manual
          Length = 1461

 Score = 27.1 bits (57), Expect = 3.6
 Identities = 15/49 (30%), Positives = 16/49 (32%)
 Frame = +1

Query: 610 PXXAPXXPXXPPXPPXPXXXPXPPXPXLXXXXXXXXPXXAAXAXPRXPP 756
           P   P     P   P P   P PP P +        P   A A P  PP
Sbjct: 732 PPPPPPAVIVPTPAPAPIPVP-PPAPIMGGPPPPPPPPGVAGAGPPPPP 779


>SPAC4F8.12c |spp42|cwf6|U5 snRNP complex subunit
           Spp42|Schizosaccharomyces pombe|chr 1|||Manual
          Length = 2363

 Score = 25.8 bits (54), Expect = 8.3
 Identities = 10/22 (45%), Positives = 10/22 (45%)
 Frame = +2

Query: 608 PPXPPXXPPXVPPHXPPLXXXP 673
           PP PP  P   PP  PP    P
Sbjct: 9   PPPPPPPPGFEPPSQPPPPPPP 30


  Database: spombe
    Posted date:  Oct 4, 2007 10:57 AM
  Number of letters in database: 2,362,478
  Number of sequences in database:  5004
  
Lambda     K      H
   0.318    0.134    0.401 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 1,320,009
Number of Sequences: 5004
Number of extensions: 12260
Number of successful extensions: 118
Number of sequences better than 10.0: 8
Number of HSP's better than 10.0 without gapping: 33
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 105
length of database: 2,362,478
effective HSP length: 72
effective length of database: 2,002,190
effective search space used: 448490560
frameshift window, decay const: 40,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)