Bombyx BLAST Result against spombe

BLASTX 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= BmNP11_T7_F22
         (808 letters)

Database: spombe 
           5004 sequences; 2,362,478 total letters

Searching..................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

SPBC1773.10c |||asparagine-tRNA ligase Ded81 |Schizosaccharomyce...    27   2.4  
SPBC14F5.10c |||ubiquitin-protein ligase E3 |Schizosaccharomyces...    27   4.1  
SPBC56F2.05c |||transcription factor |Schizosaccharomyces pombe|...    26   5.5  
SPAC2F7.03c |pom1||DYRK family protein kinase Pom1|Schizosacchar...    26   5.5  
SPAC2C4.14c |ppk11||PAK-related kinase Ppk11|Schizosaccharomyces...    26   7.2  
SPAC3C7.04 |||transcription factor |Schizosaccharomyces pombe|ch...    25   9.6  
SPBC119.17 ||SPBC577.01|metallopeptidase|Schizosaccharomyces pom...    25   9.6  

>SPBC1773.10c |||asparagine-tRNA ligase Ded81 |Schizosaccharomyces
           pombe|chr 2|||Manual
          Length = 568

 Score = 27.5 bits (58), Expect = 2.4
 Identities = 25/115 (21%), Positives = 48/115 (41%)
 Frame = -1

Query: 394 AGGAKLPSAGLCLNASKAEASLAESGKDMLTVEPRESGGSKQCDFTSRVSHSKRETRRRS 215
           A  A+  +A     A +AEA   E+ K+++  EP+++  +K+       +      R   
Sbjct: 89  AAEAEAAAAARAAAAKEAEAKRLEAAKNIVLKEPKDAPAAKKIAIIDSTNFRDSRVRVNG 148

Query: 214 PFGSRRSMLSVFFLTRASRLRRSGYNSVRCRGSE*SVDDFRSWRGVMLGRAASCC 50
                R+   + F+     + R G   ++C  S   V D  S+  + LG  ++ C
Sbjct: 149 WVHRMRTQKGIIFI-----ILRDGTGFLQCVLSG-KVYDRASYDFINLGPESTVC 197


>SPBC14F5.10c |||ubiquitin-protein ligase E3 |Schizosaccharomyces
           pombe|chr 2|||Manual
          Length = 486

 Score = 26.6 bits (56), Expect = 4.1
 Identities = 8/17 (47%), Positives = 10/17 (58%)
 Frame = +2

Query: 632 WLXQASYPWWYFSGTSC 682
           WL Q    WWY  G++C
Sbjct: 467 WLTQLQESWWYRVGSAC 483


>SPBC56F2.05c |||transcription factor |Schizosaccharomyces pombe|chr
           2|||Manual
          Length = 397

 Score = 26.2 bits (55), Expect = 5.5
 Identities = 32/133 (24%), Positives = 50/133 (37%), Gaps = 1/133 (0%)
 Frame = -1

Query: 460 SNTAQYERNRSFGHLVHALGRAAGGAKLPSAGLCLNASKAEASLAESGKDMLTVEPRESG 281
           S+T+   R     H    L  ++    L S G    +S   +++   GK+   V P  + 
Sbjct: 271 SSTSAKRRRPDHNH-TSTLDASSSNTSLASTGPMTVSS---STVERKGKEASEVNPNSTS 326

Query: 280 GSKQCDFTSRVSHSKRETRRRSPFGSRRSMLSVFFLTRASRLRRSGYNSVRC-RGSE*SV 104
                DF + +S S+    ++S  G  R            R R +G NS  C    +  V
Sbjct: 327 SVTFSDFAAAISRSRCSRCKKSKKGCDRQ-------RPCGRCRDAGLNSEDCISDDDMPV 379

Query: 103 DDFRSWRGVMLGR 65
            + R  RG   GR
Sbjct: 380 SNARKPRGRGRGR 392


>SPAC2F7.03c |pom1||DYRK family protein kinase
           Pom1|Schizosaccharomyces pombe|chr 1|||Manual
          Length = 1087

 Score = 26.2 bits (55), Expect = 5.5
 Identities = 12/46 (26%), Positives = 23/46 (50%)
 Frame = +3

Query: 54  HDAALPSITPRQERKSSTDYSEPRHRTELYPDLRSRDARVKKKTDS 191
           H  A PS+    +  SS +++     ++++PD R+ D +   K  S
Sbjct: 347 HSFATPSVFDNNKPVSSDNHNNTTTSSQVHPDSRNPDPKAAPKAVS 392


>SPAC2C4.14c |ppk11||PAK-related kinase Ppk11|Schizosaccharomyces
           pombe|chr 1|||Manual
          Length = 312

 Score = 25.8 bits (54), Expect = 7.2
 Identities = 13/31 (41%), Positives = 16/31 (51%)
 Frame = -1

Query: 106 VDDFRSWRGVMLGRAASCCDLLRLSPAPGEK 14
           VD FR W  +      SC DLL+LS    E+
Sbjct: 72  VDGFRLWITMEYCDGGSCLDLLKLSGTFSER 102


>SPAC3C7.04 |||transcription factor |Schizosaccharomyces pombe|chr
           1|||Manual
          Length = 783

 Score = 25.4 bits (53), Expect = 9.6
 Identities = 12/27 (44%), Positives = 17/27 (62%)
 Frame = +3

Query: 24  GAGLSLNRSQHDAALPSITPRQERKSS 104
           G  LS+  S+ DAALP++ P  E + S
Sbjct: 427 GRPLSIADSECDAALPTVVPELEIEGS 453


>SPBC119.17 ||SPBC577.01|metallopeptidase|Schizosaccharomyces
           pombe|chr 2|||Manual
          Length = 992

 Score = 25.4 bits (53), Expect = 9.6
 Identities = 16/52 (30%), Positives = 24/52 (46%), Gaps = 2/52 (3%)
 Frame = -1

Query: 466 CDSNTAQYERNRSFGHLVHALGRAAGGAKLPSAGLCLNA--SKAEASLAESG 317
           CD+       + S G L H + R  GG  +  + +  N+  SK E  +A SG
Sbjct: 601 CDACLNLGTHSESIGDLEHQIRRYTGGISISPSAVTNNSDVSKYELGIAISG 652


  Database: spombe
    Posted date:  Oct 4, 2007 10:57 AM
  Number of letters in database: 2,362,478
  Number of sequences in database:  5004
  
Lambda     K      H
   0.318    0.134    0.401 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 3,237,539
Number of Sequences: 5004
Number of extensions: 65451
Number of successful extensions: 162
Number of sequences better than 10.0: 7
Number of HSP's better than 10.0 without gapping: 160
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 162
length of database: 2,362,478
effective HSP length: 72
effective length of database: 2,002,190
effective search space used: 392429240
frameshift window, decay const: 40,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)