Last updated: 2022/11/18
BLASTX 2.2.12 [Aug-07-2005]
Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer,
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997),
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs", Nucleic Acids Res. 25:3389-3402.
Query= BmNP11_T7_F21
(782 letters)
Database: fruitfly
53,049 sequences; 24,988,368 total letters
Searching..................................................done
Score E
Sequences producing significant alignments: (bits) Value
X17551-1|CAA35586.1| 565|Drosophila melanogaster ORF1 for putat... 86 4e-17
BT014916-1|AAT47767.1| 409|Drosophila melanogaster RE14563p pro... 86 4e-17
AF237761-1|AAF81410.1| 501|Drosophila melanogaster unknown prot... 84 2e-16
AJ635224-1|CAG25619.1| 951|Drosophila melanogaster gag protein ... 71 1e-12
X68130-1|CAA48237.1| 943|Drosophila melanogaster protein ( D.me... 71 2e-12
U06920-1|AAC17188.3| 921|Drosophila melanogaster probable gag p... 71 2e-12
U14101-1|AAC46493.1| 1043|Drosophila melanogaster putative singl... 69 7e-12
AJ542581-1|CAD65868.3| 965|Drosophila melanogaster gag protein ... 69 1e-11
X68816-2|CAA48714.1| 536|Drosophila melanogaster T-element prot... 67 3e-11
S56442-2|AAA14198.2| 536|Drosophila melanogaster Orf2 protein. 67 3e-11
AY561850-1|AAS68533.1| 970|Drosophila melanogaster gag protein ... 66 5e-11
AJ566116-1|CAD92792.1| 970|Drosophila melanogaster gag protein ... 66 5e-11
AY600955-1|AAT12844.1| 1047|Drosophila melanogaster gag protein ... 65 1e-10
M38643-1|AAA28939.1| 549|Drosophila melanogaster protein ( D.me... 58 1e-08
M22874-1|AAA28674.1| 583|Drosophila melanogaster nucleic acid-b... 58 1e-08
M17214-1|AAA28507.1| 122|Drosophila melanogaster protein ( D.me... 58 1e-08
AY035777-1|AAK77970.1| 257|Drosophila melanogaster gag protein ... 45 1e-04
AJ302712-1|CAC16870.1| 433|Drosophila melanogaster gag protein. 41 0.002
AY118596-1|AAM49965.1| 165|Drosophila melanogaster LD48005p pro... 36 0.047
AY075371-1|AAL68216.1| 165|Drosophila melanogaster GM14667p pro... 36 0.047
AE013599-3513|AAN16117.1| 165|Drosophila melanogaster CG3800-PA... 36 0.047
AJ278684-1|CAB99191.1| 488|Drosophila melanogaster gag-like pro... 36 0.062
AE014134-756|AAN10358.4| 23015|Drosophila melanogaster CG33196-P... 33 0.44
AJ487856-1|CAD32253.1| 1830|Drosophila melanogaster hypothetical... 31 1.8
U59476-1|AAB07067.1| 352|Drosophila melanogaster RNA-binding pr... 29 7.2
AY061458-1|AAL29006.1| 352|Drosophila melanogaster LD40792p pro... 29 7.2
AE014296-1235|AAN12056.1| 352|Drosophila melanogaster CG8597-PE... 29 7.2
AE014296-1234|AAN12055.1| 352|Drosophila melanogaster CG8597-PD... 29 7.2
AE014296-1233|AAN12054.1| 352|Drosophila melanogaster CG8597-PC... 29 7.2
AE014296-1232|AAN12053.1| 352|Drosophila melanogaster CG8597-PB... 29 7.2
AE014296-1231|AAF50578.1| 352|Drosophila melanogaster CG8597-PA... 29 7.2
>X17551-1|CAA35586.1| 565|Drosophila melanogaster ORF1 for putative
RNA bindingprotein protein.
Length = 565
Score = 86.2 bits (204), Expect = 4e-17
Identities = 50/169 (29%), Positives = 87/169 (51%), Gaps = 4/169 (2%)
Frame = -1
Query: 506 HGIQIKVATPGDHRALSAYLRKENIGFHTYALQEDRELRVVIRGVPKELEIDYIKEDLTA 327
H I++++ T DHR ++ YL ++TY L+ + L+VV++G+ + I E L A
Sbjct: 259 HEIKLQIQTEADHRIVTKYLNDAGKNYYTYQLKSCKGLQVVLKGIEATVTPAEIIEALKA 318
Query: 326 QALPIVSVHRMHSGRGKQPYNMILVALEPTPEAKKK--IACLTTICGL--SGISIEAPHR 159
+ + + + + K P + + LEP +A KK + + + L I++E PH+
Sbjct: 319 KNFSAKTAINILN-KDKVPQPLFKIELEPELQALKKNEVHPIYNLQYLLHRRITVEEPHK 377
Query: 158 RGTPGQCYRCQLYGHSARNCHARPRCVKCLGDHATLDCVRDRETATEKK 12
R P QC CQ YGH+ C + CV C H T +C ++++ + KK
Sbjct: 378 RINPVQCTNCQEYGHTKAYCTLKSVCVVCSEPHTTANCPKNKDDKSVKK 426
>BT014916-1|AAT47767.1| 409|Drosophila melanogaster RE14563p
protein.
Length = 409
Score = 86.2 bits (204), Expect = 4e-17
Identities = 50/169 (29%), Positives = 87/169 (51%), Gaps = 4/169 (2%)
Frame = -1
Query: 506 HGIQIKVATPGDHRALSAYLRKENIGFHTYALQEDRELRVVIRGVPKELEIDYIKEDLTA 327
H I++++ T DHR ++ YL ++TY L+ + L+VV++G+ + I E L A
Sbjct: 103 HEIKLQIQTEADHRIVTKYLNDAGKNYYTYQLKSCKGLQVVLKGIEATVTPAEIIEALKA 162
Query: 326 QALPIVSVHRMHSGRGKQPYNMILVALEPTPEAKKK--IACLTTICGL--SGISIEAPHR 159
+ + + + + K P + + LEP +A KK + + + L I++E PH+
Sbjct: 163 KNFSAKTAINILN-KDKVPQPLFKIELEPELQALKKNEVHPIYNLQYLLHRRITVEEPHK 221
Query: 158 RGTPGQCYRCQLYGHSARNCHARPRCVKCLGDHATLDCVRDRETATEKK 12
R P QC CQ YGH+ C + CV C H T +C ++++ + KK
Sbjct: 222 RINPVQCTNCQEYGHTKAYCTLKSVCVVCSEPHTTANCPKNKDDKSVKK 270
>AF237761-1|AAF81410.1| 501|Drosophila melanogaster unknown
protein.
Length = 501
Score = 84.2 bits (199), Expect = 2e-16
Identities = 49/161 (30%), Positives = 75/161 (46%), Gaps = 5/161 (3%)
Frame = -1
Query: 500 IQIKVATPGDHRALSAYLRKENIGFHTYALQEDRELRVVIRGVPKELEIDYIKEDLTAQA 321
+++ A R + +L E FH Y L+EDR RV ++G+ IK++L
Sbjct: 164 LRLYAADANTFRTIVNWLEIEEYEFHCYQLKEDRPYRVCVKGLHHSTLHHQIKDELEKIG 223
Query: 320 LPIVSVH----RMHSGRGK-QPYNMILVALEPTPEAKKKIACLTTICGLSGISIEAPHRR 156
++ +H R G K P NM + + K+I + +C + + IE +R
Sbjct: 224 HKVLDIHTPLRRNEPGTSKASPVNMFFLNIAAAAN-NKEILAVKALCHMR-VVIEPLRKR 281
Query: 155 GTPGQCYRCQLYGHSARNCHARPRCVKCLGDHATLDCVRDR 33
QC+RCQ GH+A+ C CVKC G+H DC R R
Sbjct: 282 NAIVQCHRCQQIGHTAKYCRKAHICVKCAGEHPAKDCTRPR 322
>AJ635224-1|CAG25619.1| 951|Drosophila melanogaster gag protein
protein.
Length = 951
Score = 71.3 bits (167), Expect = 1e-12
Identities = 48/170 (28%), Positives = 70/170 (41%), Gaps = 1/170 (0%)
Frame = -1
Query: 533 NYTHARNVAHGIQIKVATPGDHRALSAYLRKENIGFHTYALQEDRELRVVIRGVPKELEI 354
+YT +G++I+ + L T + +R RVVIR +
Sbjct: 525 SYTTRAIDGNGVRIQAKDMTAFNKIKEVLVANGFPLFTNQPKSERGFRVVIRHLHHSTPC 584
Query: 353 DYIKEDLTAQALPIVSVHRMHSGRGKQPYNMILVALEPTPEAKK-KIACLTTICGLSGIS 177
+I E+L V M + P M V + + KI L I G +
Sbjct: 585 SWIVEELLKLGFQARFVRNMTNPATGGPMRMFEVEIAMAKDGSHDKIISLKQIGG-QRVD 643
Query: 176 IEAPHRRGTPGQCYRCQLYGHSARNCHARPRCVKCLGDHATLDCVRDRET 27
IE +R P QCYRCQ + H+ +C PRC+KC GDH + C + R T
Sbjct: 644 IERKNRTREPVQCYRCQGFRHAKNSCMKPPRCMKCAGDHLSSCCTKPRST 693
>X68130-1|CAA48237.1| 943|Drosophila melanogaster protein (
D.melanogaster DNA sequenceof Het-A transposable element
9D4. ).
Length = 943
Score = 70.9 bits (166), Expect = 2e-12
Identities = 46/170 (27%), Positives = 72/170 (42%), Gaps = 1/170 (0%)
Frame = -1
Query: 533 NYTHARNVAHGIQIKVATPGDHRALSAYLRKENIGFHTYALQEDRELRVVIRGVPKELEI 354
+YT +G++I+ + + L + T + +R RV+IR +
Sbjct: 517 SYTTRAIEGNGVRIQAKDMTAYNKIKEVLVANGLPLFTNQPKSERGFRVIIRHLHHSTPC 576
Query: 353 DYIKEDLTAQALPIVSVHRMHSGRGKQPYNMILVALEPTPEAKK-KIACLTTICGLSGIS 177
+I E+L V M + P M V + + KI L I G +
Sbjct: 577 SWIVEELLKLGFQARFVRNMTNPATGGPMRMFEVEIVMAKDGSHDKILSLKQIGG-QRVD 635
Query: 176 IEAPHRRGTPGQCYRCQLYGHSARNCHARPRCVKCLGDHATLDCVRDRET 27
IE +R P QCYRCQ + H+ +C PRC+KC G+H + C + R T
Sbjct: 636 IERKNRTRDPVQCYRCQGFRHAKNSCMRPPRCMKCAGEHLSSCCTKPRTT 685
>U06920-1|AAC17188.3| 921|Drosophila melanogaster probable gag
protein protein.
Length = 921
Score = 70.9 bits (166), Expect = 2e-12
Identities = 46/170 (27%), Positives = 72/170 (42%), Gaps = 1/170 (0%)
Frame = -1
Query: 533 NYTHARNVAHGIQIKVATPGDHRALSAYLRKENIGFHTYALQEDRELRVVIRGVPKELEI 354
+YT +G++I+ + + L + T + +R RV+IR +
Sbjct: 495 SYTTRAIEGNGVRIQAKDMTAYNKIKEVLVANGLPLFTNQPKSERGFRVIIRHLHHSTPC 554
Query: 353 DYIKEDLTAQALPIVSVHRMHSGRGKQPYNMILVALEPTPEAKK-KIACLTTICGLSGIS 177
+I E+L V M + P M V + + KI L I G +
Sbjct: 555 SWIVEELLKLGFQARFVRNMTNPATGGPMRMFEVEIVMAKDGSHDKILSLKQIGG-QRVD 613
Query: 176 IEAPHRRGTPGQCYRCQLYGHSARNCHARPRCVKCLGDHATLDCVRDRET 27
IE +R P QCYRCQ + H+ +C PRC+KC G+H + C + R T
Sbjct: 614 IERKNRTREPVQCYRCQGFRHAKNSCMRPPRCMKCAGEHLSSCCTKPRTT 663
>U14101-1|AAC46493.1| 1043|Drosophila melanogaster putative
single-stranded nucleicacid binding protein protein.
Length = 1043
Score = 68.9 bits (161), Expect = 7e-12
Identities = 38/167 (22%), Positives = 72/167 (43%)
Frame = -1
Query: 533 NYTHARNVAHGIQIKVATPGDHRALSAYLRKENIGFHTYALQEDRELRVVIRGVPKELEI 354
++T + + I+I+ T H A+ L + NI H++ + + ++VIR + +
Sbjct: 664 SFTTKSELGNNIRIQAKTMDAHNAIQNVLLEANIPLHSHQPKSAKGFQIVIRHLHQSTPT 723
Query: 353 DYIKEDLTAQALPIVSVHRMHSGRGKQPYNMILVALEPTPEAKKKIACLTTICGLSGISI 174
+I+ L + + M + P + V + P + L G + +
Sbjct: 724 KWIESQLQDIGIATKFIRAMQFRDTRNPMRIHEVEVVPKADGSHLKVLLLKSLGGQTVKV 783
Query: 173 EAPHRRGTPGQCYRCQLYGHSARNCHARPRCVKCLGDHATLDCVRDR 33
E P QC+RCQ +GH+ C +C+KC HAT+ C + +
Sbjct: 784 ERKRVSKDPTQCHRCQCFGHTKNYCRNPFKCMKCGQLHATVSCTKPK 830
>AJ542581-1|CAD65868.3| 965|Drosophila melanogaster gag protein
protein.
Length = 965
Score = 68.5 bits (160), Expect = 1e-11
Identities = 44/170 (25%), Positives = 70/170 (41%), Gaps = 1/170 (0%)
Frame = -1
Query: 533 NYTHARNVAHGIQIKVATPGDHRALSAYLRKENIGFHTYALQEDRELRVVIRGVPKELEI 354
+Y+ +G++I+ + + L T + +R RV+IR +
Sbjct: 532 SYSTRATEGNGVRIQAKDMTAYNKIKEVLTANGFPLFTNQPKSERGFRVIIRHLHHSTPC 591
Query: 353 DYIKEDLTAQALPIVSVHRMHSGRGKQPYNMILVALEPTPEAKK-KIACLTTICGLSGIS 177
+I E+L M + P M V + ++ KI L + G +
Sbjct: 592 SWIVEELLKLGFQARFARNMTNPATGGPMRMFEVEIVMAKDSSHGKIISLKQLGG-QRVD 650
Query: 176 IEAPHRRGTPGQCYRCQLYGHSARNCHARPRCVKCLGDHATLDCVRDRET 27
IE +R P QCYRCQ + HS +C PRC+KC G H + C + R T
Sbjct: 651 IERKNRTREPVQCYRCQGFRHSKNSCMRPPRCMKCAGGHLSSCCTKPRTT 700
>X68816-2|CAA48714.1| 536|Drosophila melanogaster T-element
protein.
Length = 536
Score = 66.9 bits (156), Expect = 3e-11
Identities = 45/170 (26%), Positives = 71/170 (41%), Gaps = 1/170 (0%)
Frame = -1
Query: 533 NYTHARNVAHGIQIKVATPGDHRALSAYLRKENIGFHTYALQEDRELRVVIRGVPKELEI 354
+YT +G++I+ + + L + T + +R RV+IR +
Sbjct: 110 SYTTRAIEGNGVRIQAKDMTAYNKIKEVLVANGLPLFTNQPKSERGFRVIIRHLHHSTPC 169
Query: 353 DYIKEDLTAQALPIVSVHRMHSGRGKQPYNMILVALEPTPEAKK-KIACLTTICGLSGIS 177
+I E+L V M + P M V + + KI L I G +
Sbjct: 170 SWIVEELLKLGFQARFVRNMTNPATGGPMRMFEVEIVMAKDGSHDKILSLKQIGG-QRVD 228
Query: 176 IEAPHRRGTPGQCYRCQLYGHSARNCHARPRCVKCLGDHATLDCVRDRET 27
IE +R P QCYRCQ + H+ +C PRC+K G+H + C + R T
Sbjct: 229 IERKNRTREPVQCYRCQGFRHAKNSCMRPPRCMKSAGEHLSSCCTKPRTT 278
>S56442-2|AAA14198.2| 536|Drosophila melanogaster Orf2 protein.
Length = 536
Score = 66.9 bits (156), Expect = 3e-11
Identities = 45/170 (26%), Positives = 71/170 (41%), Gaps = 1/170 (0%)
Frame = -1
Query: 533 NYTHARNVAHGIQIKVATPGDHRALSAYLRKENIGFHTYALQEDRELRVVIRGVPKELEI 354
+YT +G++I+ + + L + T + +R RV+IR +
Sbjct: 110 SYTTRAIEGNGVRIQAKDMTAYNKIKEVLVANGLPLFTNQPKSERGFRVIIRHLHHSTPC 169
Query: 353 DYIKEDLTAQALPIVSVHRMHSGRGKQPYNMILVALEPTPEAKK-KIACLTTICGLSGIS 177
+I E+L V M + P M V + + KI L I G +
Sbjct: 170 SWIVEELLKLGFQARFVRNMTNPATGGPMRMFEVEIVMAKDGSHDKILSLKQIGG-QRVD 228
Query: 176 IEAPHRRGTPGQCYRCQLYGHSARNCHARPRCVKCLGDHATLDCVRDRET 27
IE +R P QCYRCQ + H+ +C PRC+K G+H + C + R T
Sbjct: 229 IERKNRTREPVQCYRCQGFRHAKNSCMRPPRCMKSAGEHLSSCCTKPRTT 278
>AY561850-1|AAS68533.1| 970|Drosophila melanogaster gag protein
protein.
Length = 970
Score = 66.1 bits (154), Expect = 5e-11
Identities = 37/167 (22%), Positives = 72/167 (43%)
Frame = -1
Query: 533 NYTHARNVAHGIQIKVATPGDHRALSAYLRKENIGFHTYALQEDRELRVVIRGVPKELEI 354
++T + + I+I+ T ++A+ L NI H++ + + ++VIR + +
Sbjct: 587 SFTTKSELGNNIRIQAKTMDAYKAIQNVLLGANIPLHSHQPKSAKGFQIVIRHLHQSTPT 646
Query: 353 DYIKEDLTAQALPIVSVHRMHSGRGKQPYNMILVALEPTPEAKKKIACLTTICGLSGISI 174
+I+ L + + M + P + V + P + L G + +
Sbjct: 647 KWIESQLQDIGIATKFIRAMQFRDTRNPMRIHEVEVVPKADGSHLKVLLLKSLGGQTVKV 706
Query: 173 EAPHRRGTPGQCYRCQLYGHSARNCHARPRCVKCLGDHATLDCVRDR 33
E P QC+RCQ +GH+ C +C+KC HAT+ C + +
Sbjct: 707 ERKRVSKDPTQCHRCQCFGHTKNYCRNPFKCMKCGQLHATVSCTKPK 753
>AJ566116-1|CAD92792.1| 970|Drosophila melanogaster gag protein
protein.
Length = 970
Score = 66.1 bits (154), Expect = 5e-11
Identities = 37/167 (22%), Positives = 72/167 (43%)
Frame = -1
Query: 533 NYTHARNVAHGIQIKVATPGDHRALSAYLRKENIGFHTYALQEDRELRVVIRGVPKELEI 354
++T + + I+I+ T ++A+ L NI H++ + + ++VIR + +
Sbjct: 587 SFTTKSELGNNIRIQAKTMDAYKAIQNVLLGANIPLHSHQPKSAKGFQIVIRHLHQSTPT 646
Query: 353 DYIKEDLTAQALPIVSVHRMHSGRGKQPYNMILVALEPTPEAKKKIACLTTICGLSGISI 174
+I+ L + + M + P + V + P + L G + +
Sbjct: 647 KWIESQLQDIGIATKFIRAMQFRDTRNPMRIHEVEVVPKADGSHLKVLLLKSLGGQTVKV 706
Query: 173 EAPHRRGTPGQCYRCQLYGHSARNCHARPRCVKCLGDHATLDCVRDR 33
E P QC+RCQ +GH+ C +C+KC HAT+ C + +
Sbjct: 707 ERKRVSKDPTQCHRCQCFGHTKNYCRNPFKCMKCGQLHATVSCTKPK 753
>AY600955-1|AAT12844.1| 1047|Drosophila melanogaster gag protein
protein.
Length = 1047
Score = 64.9 bits (151), Expect = 1e-10
Identities = 36/167 (21%), Positives = 72/167 (43%)
Frame = -1
Query: 533 NYTHARNVAHGIQIKVATPGDHRALSAYLRKENIGFHTYALQEDRELRVVIRGVPKELEI 354
++T + + I+I+ T + A+ L + NI H++ + + ++VIR + +
Sbjct: 664 SFTTKSELGNNIRIQAKTMDAYNAIQNVLLEANIPLHSHQPKSAKGFQIVIRHLHQSTPT 723
Query: 353 DYIKEDLTAQALPIVSVHRMHSGRGKQPYNMILVALEPTPEAKKKIACLTTICGLSGISI 174
+I+ L + + M + P + V + P + L G + +
Sbjct: 724 KWIESQLQDIGIATKFIRAMQFRDTRNPMRIHEVEVVPKADGSHLKVLLIKSLGGQTVKV 783
Query: 173 EAPHRRGTPGQCYRCQLYGHSARNCHARPRCVKCLGDHATLDCVRDR 33
E P QC+RCQ +GH+ C +C+KC HA++ C + +
Sbjct: 784 ERKRVSKDPTQCHRCQCFGHTKNYCRNPFKCMKCGQLHASVSCTKPK 830
>M38643-1|AAA28939.1| 549|Drosophila melanogaster protein (
D.melanogaster mobileelement jockey gag-specific protein
gene, complete cds.).
Length = 549
Score = 58.0 bits (134), Expect = 1e-08
Identities = 47/183 (25%), Positives = 77/183 (42%), Gaps = 17/183 (9%)
Frame = -1
Query: 551 LQANKINYTHARNVAHGI-QIKVATPGDHRALSAYLRKENIGFHTYALQEDRELRVVIRG 375
L NY + R G+ +I A P R L K N F + L+E++ RVV++G
Sbjct: 220 LSTGSSNY-YIRISRFGVSRIYTANPDAFRTAVKELNKLNCQFWHHQLKEEKPYRVVLKG 278
Query: 374 VPKELEIDYIKEDLTAQALPIVSVH--RMHSGRG--------------KQPYNMILVALE 243
+ + I++ + +++++ R + K N+ + L+
Sbjct: 279 IHANVPSSQIEQAFSDHGYEVLNIYCPRKSDWKNIQVNEDDNEATKNFKTRQNLFYINLK 338
Query: 242 PTPEAKKKIACLTTICGLSGISIEAPHRRGTPGQCYRCQLYGHSARNCHARPRCVKCLGD 63
P K+ + T G +++E RR QC RCQ++GHS C P C KC G
Sbjct: 339 QGPNVKESLKI--TRLGRYRVTVERATRRKELLQCQRCQIFGHSKNYCAQDPICGKCSGP 396
Query: 62 HAT 54
H T
Sbjct: 397 HMT 399
>M22874-1|AAA28674.1| 583|Drosophila melanogaster nucleic
acid-binding protiein protein.
Length = 583
Score = 58.0 bits (134), Expect = 1e-08
Identities = 47/183 (25%), Positives = 77/183 (42%), Gaps = 17/183 (9%)
Frame = -1
Query: 551 LQANKINYTHARNVAHGI-QIKVATPGDHRALSAYLRKENIGFHTYALQEDRELRVVIRG 375
L NY + R G+ +I A P R L K N F + L+E++ RVV++G
Sbjct: 254 LSTGSSNY-YIRISRFGVSRIYTANPDAFRTAVKELNKLNCQFWHHQLKEEKPYRVVLKG 312
Query: 374 VPKELEIDYIKEDLTAQALPIVSVH--RMHSGRG--------------KQPYNMILVALE 243
+ + I++ + +++++ R + K N+ + L+
Sbjct: 313 IHANVPSSQIEQAFSDHGYEVLNIYCPRKSDWKNIQVNEDDNEATKNFKTRQNLFYINLK 372
Query: 242 PTPEAKKKIACLTTICGLSGISIEAPHRRGTPGQCYRCQLYGHSARNCHARPRCVKCLGD 63
P K+ + T G +++E RR QC RCQ++GHS C P C KC G
Sbjct: 373 QGPNVKESLKI--TRLGRYRVTVERATRRKELLQCQRCQIFGHSKNYCAQDPICGKCSGP 430
Query: 62 HAT 54
H T
Sbjct: 431 HMT 433
>M17214-1|AAA28507.1| 122|Drosophila melanogaster protein (
D.melanogaster Fw repetitiveelement putative reverse
transcriptase, complete cds,and putative binding
protein, 3' end. ).
Length = 122
Score = 58.0 bits (134), Expect = 1e-08
Identities = 25/57 (43%), Positives = 32/57 (56%)
Frame = -1
Query: 182 ISIEAPHRRGTPGQCYRCQLYGHSARNCHARPRCVKCLGDHATLDCVRDRETATEKK 12
I++E PH+R P QC CQ YGH+ C P CV C H + C ++E A EKK
Sbjct: 26 ITVEEPHKRNAPVQCTNCQEYGHTRSYCTLAPVCVVCGDLHDSKQCQINKENACEKK 82
>AY035777-1|AAK77970.1| 257|Drosophila melanogaster gag protein
protein.
Length = 257
Score = 44.8 bits (101), Expect = 1e-04
Identities = 16/39 (41%), Positives = 24/39 (61%)
Frame = -1
Query: 149 PGQCYRCQLYGHSARNCHARPRCVKCLGDHATLDCVRDR 33
P QC+RCQ +GH+ C +C+KC HAT+ C + +
Sbjct: 2 PTQCHRCQCFGHTKNYCRNPFKCMKCGQLHATVSCTKPK 40
>AJ302712-1|CAC16870.1| 433|Drosophila melanogaster gag protein.
Length = 433
Score = 40.7 bits (91), Expect = 0.002
Identities = 16/38 (42%), Positives = 22/38 (57%), Gaps = 1/38 (2%)
Frame = -1
Query: 149 PGQCYRCQLYGHSARNCHARPRCVKC-LGDHATLDCVR 39
P +C CQL GH++++C P CV C L H + C R
Sbjct: 201 PMRCKSCQLLGHTSKHCKNPPACVSCNLAPHLPVPCTR 238
>AY118596-1|AAM49965.1| 165|Drosophila melanogaster LD48005p
protein.
Length = 165
Score = 36.3 bits (80), Expect = 0.047
Identities = 15/37 (40%), Positives = 21/37 (56%), Gaps = 2/37 (5%)
Frame = -1
Query: 143 QCYRCQLYGHSARNC-HARPRCVKCLG-DHATLDCVR 39
+CY+C +GH AR C RC +C G H + DC +
Sbjct: 56 KCYKCNQFGHFARACPEEAERCYRCNGIGHISKDCTQ 92
Score = 29.5 bits (63), Expect = 5.4
Identities = 16/46 (34%), Positives = 21/46 (45%), Gaps = 3/46 (6%)
Frame = -1
Query: 173 EAPHRRG-TPGQCYRCQLYGHSARNC-HARPRCVKC-LGDHATLDC 45
EA + RG T CY+C GH ++NC C C H +C
Sbjct: 113 EAVNERGPTNVSCYKCNRTGHISKNCPETSKTCYGCGKSGHLRREC 158
>AY075371-1|AAL68216.1| 165|Drosophila melanogaster GM14667p
protein.
Length = 165
Score = 36.3 bits (80), Expect = 0.047
Identities = 15/37 (40%), Positives = 21/37 (56%), Gaps = 2/37 (5%)
Frame = -1
Query: 143 QCYRCQLYGHSARNC-HARPRCVKCLG-DHATLDCVR 39
+CY+C +GH AR C RC +C G H + DC +
Sbjct: 56 KCYKCNQFGHFARACPEEAERCYRCNGIGHISKDCTQ 92
Score = 29.5 bits (63), Expect = 5.4
Identities = 16/46 (34%), Positives = 21/46 (45%), Gaps = 3/46 (6%)
Frame = -1
Query: 173 EAPHRRG-TPGQCYRCQLYGHSARNC-HARPRCVKC-LGDHATLDC 45
EA + RG T CY+C GH ++NC C C H +C
Sbjct: 113 EAVNERGPTNVSCYKCNRTGHISKNCPETSKTCYGCGKSGHLRREC 158
>AE013599-3513|AAN16117.1| 165|Drosophila melanogaster CG3800-PA
protein.
Length = 165
Score = 36.3 bits (80), Expect = 0.047
Identities = 15/37 (40%), Positives = 21/37 (56%), Gaps = 2/37 (5%)
Frame = -1
Query: 143 QCYRCQLYGHSARNC-HARPRCVKCLG-DHATLDCVR 39
+CY+C +GH AR C RC +C G H + DC +
Sbjct: 56 KCYKCNQFGHFARACPEEAERCYRCNGIGHISKDCTQ 92
Score = 29.5 bits (63), Expect = 5.4
Identities = 16/46 (34%), Positives = 21/46 (45%), Gaps = 3/46 (6%)
Frame = -1
Query: 173 EAPHRRG-TPGQCYRCQLYGHSARNC-HARPRCVKC-LGDHATLDC 45
EA + RG T CY+C GH ++NC C C H +C
Sbjct: 113 EAVNERGPTNVSCYKCNRTGHISKNCPETSKTCYGCGKSGHLRREC 158
>AJ278684-1|CAB99191.1| 488|Drosophila melanogaster gag-like
protein protein.
Length = 488
Score = 35.9 bits (79), Expect = 0.062
Identities = 13/26 (50%), Positives = 16/26 (61%)
Frame = -1
Query: 140 CYRCQLYGHSARNCHARPRCVKCLGD 63
C RC +GH A+ C A PRC+ C D
Sbjct: 431 CLRCGEHGHKAKGCVAPPRCLICSSD 456
Score = 29.1 bits (62), Expect = 7.2
Identities = 13/33 (39%), Positives = 20/33 (60%), Gaps = 3/33 (9%)
Frame = -1
Query: 149 PGQCYRCQLYGHSARNCHARPR---CVKCLGDH 60
P +C+RC +GH A C + R C++C G+H
Sbjct: 406 PIRCFRCLEFGHRAPYCKSVDRSDCCLRC-GEH 437
>AE014134-756|AAN10358.4| 23015|Drosophila melanogaster CG33196-PB
protein.
Length = 23015
Score = 33.1 bits (72), Expect = 0.44
Identities = 25/81 (30%), Positives = 34/81 (41%), Gaps = 1/81 (1%)
Frame = -1
Query: 272 PYNMIL-VALEPTPEAKKKIACLTTICGLSGISIEAPHRRGTPGQCYRCQLYGHSARNCH 96
P+N + LEP P K C+ + CG + ++ RG+P C Y NC
Sbjct: 11114 PFNRCTKILLEPPPTEKSGNPCIPSPCGPNSKCLDV---RGSPA-CSCLPDYLGRPPNC- 11168
Query: 95 ARPRCVKCLGDHATLDCVRDR 33
RP C+ A L CV R
Sbjct: 11169 -RPECLSSADCPANLACVNQR 11188
>AJ487856-1|CAD32253.1| 1830|Drosophila melanogaster hypothetical
protein protein.
Length = 1830
Score = 31.1 bits (67), Expect = 1.8
Identities = 12/30 (40%), Positives = 14/30 (46%)
Frame = -1
Query: 140 CYRCQLYGHSARNCHARPRCVKCLGDHATL 51
C C GH R+C + C C G H TL
Sbjct: 464 CLNCFARGHQLRDCTSMHSCFTCKGRHHTL 493
>U59476-1|AAB07067.1| 352|Drosophila melanogaster RNA-binding
protein lark protein.
Length = 352
Score = 29.1 bits (62), Expect = 7.2
Identities = 10/19 (52%), Positives = 12/19 (63%)
Frame = -1
Query: 155 GTPGQCYRCQLYGHSARNC 99
G P QCYRC GH ++ C
Sbjct: 165 GDPEQCYRCGRSGHWSKEC 183
>AY061458-1|AAL29006.1| 352|Drosophila melanogaster LD40792p
protein.
Length = 352
Score = 29.1 bits (62), Expect = 7.2
Identities = 10/19 (52%), Positives = 12/19 (63%)
Frame = -1
Query: 155 GTPGQCYRCQLYGHSARNC 99
G P QCYRC GH ++ C
Sbjct: 165 GDPEQCYRCGRSGHWSKEC 183
>AE014296-1235|AAN12056.1| 352|Drosophila melanogaster CG8597-PE,
isoform E protein.
Length = 352
Score = 29.1 bits (62), Expect = 7.2
Identities = 10/19 (52%), Positives = 12/19 (63%)
Frame = -1
Query: 155 GTPGQCYRCQLYGHSARNC 99
G P QCYRC GH ++ C
Sbjct: 165 GDPEQCYRCGRSGHWSKEC 183
>AE014296-1234|AAN12055.1| 352|Drosophila melanogaster CG8597-PD,
isoform D protein.
Length = 352
Score = 29.1 bits (62), Expect = 7.2
Identities = 10/19 (52%), Positives = 12/19 (63%)
Frame = -1
Query: 155 GTPGQCYRCQLYGHSARNC 99
G P QCYRC GH ++ C
Sbjct: 165 GDPEQCYRCGRSGHWSKEC 183
>AE014296-1233|AAN12054.1| 352|Drosophila melanogaster CG8597-PC,
isoform C protein.
Length = 352
Score = 29.1 bits (62), Expect = 7.2
Identities = 10/19 (52%), Positives = 12/19 (63%)
Frame = -1
Query: 155 GTPGQCYRCQLYGHSARNC 99
G P QCYRC GH ++ C
Sbjct: 165 GDPEQCYRCGRSGHWSKEC 183
>AE014296-1232|AAN12053.1| 352|Drosophila melanogaster CG8597-PB,
isoform B protein.
Length = 352
Score = 29.1 bits (62), Expect = 7.2
Identities = 10/19 (52%), Positives = 12/19 (63%)
Frame = -1
Query: 155 GTPGQCYRCQLYGHSARNC 99
G P QCYRC GH ++ C
Sbjct: 165 GDPEQCYRCGRSGHWSKEC 183
>AE014296-1231|AAF50578.1| 352|Drosophila melanogaster CG8597-PA,
isoform A protein.
Length = 352
Score = 29.1 bits (62), Expect = 7.2
Identities = 10/19 (52%), Positives = 12/19 (63%)
Frame = -1
Query: 155 GTPGQCYRCQLYGHSARNC 99
G P QCYRC GH ++ C
Sbjct: 165 GDPEQCYRCGRSGHWSKEC 183
Database: fruitfly
Posted date: Oct 23, 2007 1:17 PM
Number of letters in database: 24,988,368
Number of sequences in database: 53,049
Lambda K H
0.318 0.134 0.401
Gapped
Lambda K H
0.279 0.0580 0.190
Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 32,070,077
Number of Sequences: 53049
Number of extensions: 733196
Number of successful extensions: 2312
Number of sequences better than 10.0: 31
Number of HSP's better than 10.0 without gapping: 2157
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 2303
length of database: 24,988,368
effective HSP length: 84
effective length of database: 20,532,252
effective search space used: 3613676352
frameshift window, decay const: 40, 0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)
- SilkBase 1999-2023 -