Bombyx BLAST Result against rice

BLASTX 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= BmNP11_T7_F16
         (838 letters)

Database: rice 
           37,544 sequences; 14,793,348 total letters

Searching..................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

01_06_1613 + 38643833-38643974,38644054-38644190,38644828-386452...    50   2e-06
03_06_0212 + 32400982-32402055                                         31   0.86 
04_04_0612 + 26611743-26611878,26612211-26612340,26613243-26613798     30   2.0  
09_04_0078 + 14379720-14379786,14379903-14379974,14381093-143814...    29   3.5  
02_05_0101 - 25824093-25824112,25824734-25824842,25824927-258264...    29   4.6  

>01_06_1613 +
           38643833-38643974,38644054-38644190,38644828-38645207,
           38645487-38645583,38645685-38645972,38646683-38647648
          Length = 669

 Score = 50.0 bits (114), Expect = 2e-06
 Identities = 20/37 (54%), Positives = 28/37 (75%)
 Frame = -1

Query: 322 ADLSKPPDPERWLPKYERTAYRKRRGIRRDVIKGSQG 212
           A+   PPDPERWLPK ER++YR +R  +R  ++G+QG
Sbjct: 589 ANPGPPPDPERWLPKRERSSYRPKRKDKRAQVRGAQG 625


>03_06_0212 + 32400982-32402055
          Length = 357

 Score = 31.5 bits (68), Expect = 0.86
 Identities = 19/60 (31%), Positives = 26/60 (43%)
 Frame = -2

Query: 405 NNLPELPALSWDRRRKRNASATANSRRTQTSPNLPIRKGGCQSTSELRTESDEALDVTSS 226
           + LP L   ++       A A    RR+Q        K GC STSE    SD+ + V S+
Sbjct: 108 DTLPSLDPAAFAAIPHAAADAAPTRRRSQQQQQQLSNKSGCSSTSETSKGSDKEVTVASA 167


>04_04_0612 + 26611743-26611878,26612211-26612340,26613243-26613798
          Length = 273

 Score = 30.3 bits (65), Expect = 2.0
 Identities = 14/33 (42%), Positives = 18/33 (54%)
 Frame = -3

Query: 161 AYPGDLCQESPGRSQADRERLAAQATAEEERQG 63
           A P D+   SP RS+  +ER+AA   A  E  G
Sbjct: 128 AEPADVVTGSPNRSETGQERVAADRPASSESSG 160


>09_04_0078 +
           14379720-14379786,14379903-14379974,14381093-14381497,
           14382835-14382911,14383016-14383135,14383227-14383997,
           14384933-14385146,14385269-14385735
          Length = 730

 Score = 29.5 bits (63), Expect = 3.5
 Identities = 19/64 (29%), Positives = 33/64 (51%), Gaps = 2/64 (3%)
 Frame = -2

Query: 381 LSWDRRRKRNASATANSR-RTQTSPNLPIR-KGGCQSTSELRTESDEALDVTSSRVAKEC 208
           + WD RR++ AS   N+R R   + N P R +GG ++ S++   ++  +  T   V  E 
Sbjct: 37  MGWDNRRRKQASTIMNARGRGARNGNGPNRGRGGGRAHSDVVVGANTTVLATRRWVGLEI 96

Query: 207 PPLP 196
             +P
Sbjct: 97  DSVP 100


>02_05_0101 -
           25824093-25824112,25824734-25824842,25824927-25826429,
           25826596-25827333,25827712-25827919,25828455-25830409,
           25830868-25830960,25831044-25831100,25831189-25831272,
           25831345-25831437,25831622-25832053,25833593-25833933,
           25834663-25835215
          Length = 2061

 Score = 29.1 bits (62), Expect = 4.6
 Identities = 18/62 (29%), Positives = 21/62 (33%)
 Frame = -2

Query: 378 SWDRRRKRNASATANSRRTQTSPNLPIRKGGCQSTSELRTESDEALDVTSSRVAKECPPL 199
           SW RRR R       SRR +         GGC    + R    E   V    V     P+
Sbjct: 126 SWRRRRSRTRQRRRRSRRRRRRRRTCGGGGGCGRGGDARGRPTELAKVVDGAVTPSLVPV 185

Query: 198 PR 193
            R
Sbjct: 186 DR 187


  Database: rice
    Posted date:  Oct 4, 2007 10:57 AM
  Number of letters in database: 14,793,348
  Number of sequences in database:  37,544
  
Lambda     K      H
   0.318    0.134    0.401 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 16,088,073
Number of Sequences: 37544
Number of extensions: 281669
Number of successful extensions: 854
Number of sequences better than 10.0: 5
Number of HSP's better than 10.0 without gapping: 825
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 854
length of database: 14,793,348
effective HSP length: 81
effective length of database: 11,752,284
effective search space used: 2315199948
frameshift window, decay const: 40,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)