Last updated: 2022/11/18
BLASTX 2.2.12 [Aug-07-2005]
Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer,
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997),
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs", Nucleic Acids Res. 25:3389-3402.
Query= BmNP11_T7_F16
(838 letters)
Database: celegans
27,780 sequences; 12,740,198 total letters
Searching..................................................done
Score E
Sequences producing significant alignments: (bits) Value
U80840-12|AAB37925.1| 694|Caenorhabditis elegans Hypothetical p... 50 2e-06
AL031629-3|CAA20976.1| 555|Caenorhabditis elegans Hypothetical ... 30 2.3
Z83316-8|CAB54186.1| 409|Caenorhabditis elegans Hypothetical pr... 29 3.1
U41538-2|AAG00010.1| 997|Caenorhabditis elegans Hypothetical pr... 29 5.4
U00050-10|AAA50701.1| 153|Caenorhabditis elegans Myosin light c... 28 9.5
L03412-1|AAA28112.1| 153|Caenorhabditis elegans alkali myosin l... 28 9.5
AF273806-1|AAG15155.1| 395|Caenorhabditis elegans nuclear recep... 28 9.5
AF022976-15|AAO26008.1| 324|Caenorhabditis elegans Nuclear horm... 28 9.5
AF022976-14|AAC69077.1| 393|Caenorhabditis elegans Nuclear horm... 28 9.5
>U80840-12|AAB37925.1| 694|Caenorhabditis elegans Hypothetical
protein F08D12.1 protein.
Length = 694
Score = 50.4 bits (115), Expect = 2e-06
Identities = 22/45 (48%), Positives = 32/45 (71%), Gaps = 1/45 (2%)
Frame = -1
Query: 334 LPPNADLSKPPDPERWLPKYERTAY-RKRRGIRRDVIKGSQGMST 203
LP N + + PDPERWLP+ ER+ Y RKR+ R++ +G+QG S+
Sbjct: 605 LPKNYNSAVTPDPERWLPRQERSTYKRKRKNREREIGRGTQGSSS 649
>AL031629-3|CAA20976.1| 555|Caenorhabditis elegans Hypothetical
protein Y106G6D.3 protein.
Length = 555
Score = 29.9 bits (64), Expect = 2.3
Identities = 17/67 (25%), Positives = 29/67 (43%), Gaps = 3/67 (4%)
Frame = -2
Query: 393 ELPALSWDRRRKRNASATANSRRT---QTSPNLPIRKGGCQSTSELRTESDEALDVTSSR 223
E A +W RRR+ +R+T + + +P +K S R+ + SSR
Sbjct: 247 EAEAPNWRRRRRAKEDQNVKARKTKKVKKNEEVPSKKSSKMSKRSKRSTDENLETAKSSR 306
Query: 222 VAKECPP 202
+ K+ P
Sbjct: 307 ILKDSEP 313
>Z83316-8|CAB54186.1| 409|Caenorhabditis elegans Hypothetical
protein B0379.7 protein.
Length = 409
Score = 29.5 bits (63), Expect = 3.1
Identities = 18/67 (26%), Positives = 32/67 (47%)
Frame = -2
Query: 444 ELKSSRRLFKASRNNLPELPALSWDRRRKRNASATANSRRTQTSPNLPIRKGGCQSTSEL 265
E K S+++ K +N + S R+ K+N + S T P + G Q+ +EL
Sbjct: 211 ESKKSKKI-KKKKNKKSKDKKKSNSRKNKKNKKSKGKSTSTSEPPTPNQPETGVQTANEL 269
Query: 264 RTESDEA 244
R ++ E+
Sbjct: 270 RNDAPES 276
>U41538-2|AAG00010.1| 997|Caenorhabditis elegans Hypothetical
protein R04E5.8a protein.
Length = 997
Score = 28.7 bits (61), Expect = 5.4
Identities = 22/76 (28%), Positives = 35/76 (46%)
Frame = -2
Query: 438 KSSRRLFKASRNNLPELPALSWDRRRKRNASATANSRRTQTSPNLPIRKGGCQSTSELRT 259
KSSR+ K S+ + E + S D R + S T +S GG STSE +
Sbjct: 675 KSSRKRSKKSKKS-NETSSSSSDERLIHSQSPPTPQNTTSSSDVSSSSSGGSASTSESSS 733
Query: 258 ESDEALDVTSSRVAKE 211
+ A V++ + +K+
Sbjct: 734 SAPSAEQVSTPKKSKK 749
>U00050-10|AAA50701.1| 153|Caenorhabditis elegans Myosin light
chain protein 3, isoforma protein.
Length = 153
Score = 27.9 bits (59), Expect = 9.5
Identities = 11/25 (44%), Positives = 14/25 (56%)
Frame = -1
Query: 295 ERWLPKYERTAYRKRRGIRRDVIKG 221
E WLP YE+ A K +G D +G
Sbjct: 64 EEWLPMYEQLAKEKEQGTYADFYEG 88
>L03412-1|AAA28112.1| 153|Caenorhabditis elegans alkali myosin
light chain protein.
Length = 153
Score = 27.9 bits (59), Expect = 9.5
Identities = 11/25 (44%), Positives = 14/25 (56%)
Frame = -1
Query: 295 ERWLPKYERTAYRKRRGIRRDVIKG 221
E WLP YE+ A K +G D +G
Sbjct: 64 EEWLPMYEQLAKEKEQGTYADFYEG 88
>AF273806-1|AAG15155.1| 395|Caenorhabditis elegans nuclear receptor
NHR-58 protein.
Length = 395
Score = 27.9 bits (59), Expect = 9.5
Identities = 13/36 (36%), Positives = 21/36 (58%)
Frame = +3
Query: 396 GDCSCLL*TVFLTTLAPIIHFDEFQGVNIDFRLELV 503
GDCS FLTT + +FDEFQ + +++++
Sbjct: 175 GDCSDCWEYYFLTTATWLTNFDEFQKLEHPVKMKIL 210
>AF022976-15|AAO26008.1| 324|Caenorhabditis elegans Nuclear hormone
receptor familyprotein 58, isoform b protein.
Length = 324
Score = 27.9 bits (59), Expect = 9.5
Identities = 13/36 (36%), Positives = 21/36 (58%)
Frame = +3
Query: 396 GDCSCLL*TVFLTTLAPIIHFDEFQGVNIDFRLELV 503
GDCS FLTT + +FDEFQ + +++++
Sbjct: 104 GDCSDCWEYYFLTTATWLTNFDEFQKLEHPVKMKIL 139
>AF022976-14|AAC69077.1| 393|Caenorhabditis elegans Nuclear hormone
receptor familyprotein 58, isoform a protein.
Length = 393
Score = 27.9 bits (59), Expect = 9.5
Identities = 13/36 (36%), Positives = 21/36 (58%)
Frame = +3
Query: 396 GDCSCLL*TVFLTTLAPIIHFDEFQGVNIDFRLELV 503
GDCS FLTT + +FDEFQ + +++++
Sbjct: 173 GDCSDCWEYYFLTTATWLTNFDEFQKLEHPVKMKIL 208
Database: celegans
Posted date: Oct 23, 2007 1:18 PM
Number of letters in database: 12,740,198
Number of sequences in database: 27,780
Lambda K H
0.318 0.134 0.401
Gapped
Lambda K H
0.279 0.0580 0.190
Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 12,345,208
Number of Sequences: 27780
Number of extensions: 212330
Number of successful extensions: 678
Number of sequences better than 10.0: 9
Number of HSP's better than 10.0 without gapping: 643
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 677
length of database: 12,740,198
effective HSP length: 81
effective length of database: 10,490,018
effective search space used: 2066533546
frameshift window, decay const: 40, 0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)
- SilkBase 1999-2023 -