Bombyx BLAST Result against rice

BLASTX 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= BmNP11_T7_F14
         (901 letters)

Database: rice 
           37,544 sequences; 14,793,348 total letters

Searching..................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

03_01_0601 + 4423831-4424115,4424278-4424406,4424615-4424779,442...    30   2.2  
07_03_0736 - 21079880-21080185,21080231-21080429,21080531-210807...    29   3.8  
07_01_0004 + 35300-35533,35617-35732,39044-39287,39451-40578,406...    29   5.0  
02_05_0040 + 25341418-25341810                                         29   5.0  
07_03_0658 - 20366559-20367562,20367745-20367937                       29   6.7  
06_03_0108 - 16732215-16732572,16732623-16732741,16733344-167333...    29   6.7  
06_01_0464 - 3300356-3300673,3300757-3301244,3301315-3302137           29   6.7  
07_03_0797 + 21575948-21576042,21576140-21576902,21577134-215773...    28   8.8  

>03_01_0601 +
           4423831-4424115,4424278-4424406,4424615-4424779,
           4424925-4425230,4425387-4425448,4425776-4426145,
           4426427-4426555,4427233-4427397,4427534-4427839,
           4427928-4428068
          Length = 685

 Score = 30.3 bits (65), Expect = 2.2
 Identities = 22/56 (39%), Positives = 27/56 (48%), Gaps = 5/56 (8%)
 Frame = +2

Query: 602 RPXLESGGWIGPGVFYGGQNSVDG----VSRRSDGSL-NELCLYXPPTVHAYRPFA 754
           +P L SGGWIG G   GG +++ G    V   + G L   LC       HA R FA
Sbjct: 332 KPALTSGGWIGGG---GGDSTMGGGMRVVVTGATGYLGGRLCAALAAAGHAVRAFA 384


>07_03_0736 -
           21079880-21080185,21080231-21080429,21080531-21080768,
           21080888-21081098,21081181-21081320,21081400-21081537,
           21086208-21087036
          Length = 686

 Score = 29.5 bits (63), Expect = 3.8
 Identities = 14/34 (41%), Positives = 21/34 (61%)
 Frame = -3

Query: 119 PTASTMAPCARAAGRGRY*SIPRGAQAYXVPSVS 18
           PTAS  A  A AAG G+  ++PR   A  +P+++
Sbjct: 262 PTASPPAAAAAAAGEGKDYNVPRLVLAILLPTIA 295


>07_01_0004 +
           35300-35533,35617-35732,39044-39287,39451-40578,
           40657-40833
          Length = 632

 Score = 29.1 bits (62), Expect = 5.0
 Identities = 14/37 (37%), Positives = 19/37 (51%)
 Frame = -3

Query: 539 YRTSLYKKAGWYRSGIPRALCDIHCAGADSLSLISWW 429
           Y+TSL  + G ++ G+PR  C    AG D L     W
Sbjct: 285 YQTSLSPRCGAFKDGVPRMSC-AKIAGRDKLKRRGDW 320


>02_05_0040 + 25341418-25341810
          Length = 130

 Score = 29.1 bits (62), Expect = 5.0
 Identities = 15/33 (45%), Positives = 17/33 (51%)
 Frame = +3

Query: 117 RRAAPA*SCGHSRSEMSASRRRLSAPNAYDSPP 215
           RRAAP   CG S+   S  +RR  AP    S P
Sbjct: 74  RRAAPRRRCGGSKRRCSGPQRRRGAPRRRCSGP 106


>07_03_0658 - 20366559-20367562,20367745-20367937
          Length = 398

 Score = 28.7 bits (61), Expect = 6.7
 Identities = 16/56 (28%), Positives = 23/56 (41%)
 Frame = +1

Query: 172 VVVGSRHRMRMILRQHGFGQCVEQRPLVPEVPVKRRLLNPQPFRQFACRQTVYADL 339
           V+ G+ H + M L +HG    V  + L+P        L    FRQ       + DL
Sbjct: 251 VIPGTEHALNMRLTEHGLDGHVSIKDLIPLAAANADELLSDAFRQLGLAGVEWNDL 306


>06_03_0108 -
           16732215-16732572,16732623-16732741,16733344-16733393,
           16734619-16734820
          Length = 242

 Score = 28.7 bits (61), Expect = 6.7
 Identities = 14/27 (51%), Positives = 16/27 (59%)
 Frame = +2

Query: 617 SGGWIGPGVFYGGQNSVDGVSRRSDGS 697
           SGG  GP V YGG+    GV R+ D S
Sbjct: 143 SGG-TGPAVDYGGRGDSGGVRRKEDSS 168


>06_01_0464 - 3300356-3300673,3300757-3301244,3301315-3302137
          Length = 542

 Score = 28.7 bits (61), Expect = 6.7
 Identities = 13/34 (38%), Positives = 20/34 (58%), Gaps = 1/34 (2%)
 Frame = -3

Query: 602 AGRITISHRKQL*P-LGLFR*HYRTSLYKKAGWY 504
           AG + +SH   + P L +FR  ++  L+K  GWY
Sbjct: 130 AGFLVLSHHAGVPPSLAVFRHFFKLCLFKSNGWY 163


>07_03_0797 +
           21575948-21576042,21576140-21576902,21577134-21577327,
           21577667-21577700,21578421-21578485,21579032-21579524
          Length = 547

 Score = 28.3 bits (60), Expect = 8.8
 Identities = 15/37 (40%), Positives = 20/37 (54%)
 Frame = -3

Query: 131 RRCSPTASTMAPCARAAGRGRY*SIPRGAQAYXVPSV 21
           R  +PTA+ ++P A   G G+  S  R AQA  V  V
Sbjct: 130 REAAPTAAPVSPAASGGGGGQIWSATRIAQASAVEKV 166


  Database: rice
    Posted date:  Oct 4, 2007 10:57 AM
  Number of letters in database: 14,793,348
  Number of sequences in database:  37,544
  
Lambda     K      H
   0.318    0.134    0.401 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 24,623,725
Number of Sequences: 37544
Number of extensions: 535138
Number of successful extensions: 1311
Number of sequences better than 10.0: 8
Number of HSP's better than 10.0 without gapping: 1260
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 1308
length of database: 14,793,348
effective HSP length: 82
effective length of database: 11,714,740
effective search space used: 2542098580
frameshift window, decay const: 40,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)