Last updated: 2022/11/18
BLASTX 2.2.12 [Aug-07-2005]
Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer,
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997),
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs", Nucleic Acids Res. 25:3389-3402.
Query= BmNP11_T7_F11
(840 letters)
Database: rice
37,544 sequences; 14,793,348 total letters
Searching..................................................done
Score E
Sequences producing significant alignments: (bits) Value
01_06_0381 + 28878811-28879120,28880189-28880331,28880753-288815... 33 0.37
08_02_0707 - 20212190-20214592 30 2.6
02_03_0287 + 17320242-17320481,17323422-17324767,17325124-17325142 29 4.6
01_07_0213 - 42028941-42029055,42029444-42029480,42029876-420302... 29 4.6
01_06_0140 - 26881282-26881290,26882027-26882128,26882816-268829... 29 6.1
05_04_0389 - 20845490-20845600,20845697-20846006,20846097-208462... 28 8.1
01_07_0074 - 40894916-40895754,40896322-40896691,40897239-408972... 28 8.1
01_01_0645 + 4890647-4890682,4891684-4891929,4892021-4892317,489... 28 8.1
>01_06_0381 +
28878811-28879120,28880189-28880331,28880753-28881532,
28882568-28883968
Length = 877
Score = 32.7 bits (71), Expect = 0.37
Identities = 17/46 (36%), Positives = 22/46 (47%)
Frame = +2
Query: 434 RRYSHTEEANREHLSSTHKHALHRKNLHPPAEPEHRRIARHERTGR 571
R + E EH SS +H HR + H + EHR RH+R R
Sbjct: 773 RHRDSSSEDEHEHRSSKSRHR-HRDDYHYHEDDEHRSSHRHQRDHR 817
Score = 32.3 bits (70), Expect = 0.49
Identities = 19/52 (36%), Positives = 24/52 (46%)
Frame = +2
Query: 389 SHHANYNFTGSTSLTRRYSHTEEANREHLSSTHKHALHRKNLHPPAEPEHRR 544
S NY+ S +R+ H E +R H S HKH L R + EP H R
Sbjct: 725 SDEENYDSEESYKHSRK-KHRSEDSRAHTSDVHKHKLKRHS--KDLEPRHHR 773
>08_02_0707 - 20212190-20214592
Length = 800
Score = 29.9 bits (64), Expect = 2.6
Identities = 16/56 (28%), Positives = 27/56 (48%)
Frame = +2
Query: 389 SHHANYNFTGSTSLTRRYSHTEEANREHLSSTHKHALHRKNLHPPAEPEHRRIARH 556
SHH +++ S + S TE + +E+ S H H H + H +E H++ H
Sbjct: 549 SHHHDHHHDSSNEESHHNSLTENSCKENHSHCHGHDHHHHHHHDHSE-HHQQSGDH 603
>02_03_0287 + 17320242-17320481,17323422-17324767,17325124-17325142
Length = 534
Score = 29.1 bits (62), Expect = 4.6
Identities = 16/44 (36%), Positives = 21/44 (47%)
Frame = +3
Query: 339 HKTFYHHANFLPQQILPATTQTTILRVPPLLHDVTPTLRKPTAN 470
H+ F +FLP +I L+VPP LH V P P A+
Sbjct: 75 HRWFAQGFHFLPARIPMDGPSGWFLKVPPPLHTVDPPGSPPPAS 118
>01_07_0213 -
42028941-42029055,42029444-42029480,42029876-42030244,
42030332-42031201,42051574-42052891
Length = 902
Score = 29.1 bits (62), Expect = 4.6
Identities = 19/54 (35%), Positives = 26/54 (48%)
Frame = +2
Query: 314 SRPATCADSQDILPPCKLLTATNLTSHHANYNFTGSTSLTRRYSHTEEANREHL 475
S PAT + + P +LLT+ TSH + N T S SH + + RE L
Sbjct: 685 SSPATASAAAASKKP-RLLTSQTTTSHTSTSNATTPRSFDTTSSHQDASFRESL 737
>01_06_0140 -
26881282-26881290,26882027-26882128,26882816-26882924,
26883712-26883860,26883941-26884043,26884635-26884810,
26885004-26885066,26885258-26885346,26885428-26885538,
26885610-26885744,26886415-26886580,26886788-26886856,
26886943-26887230,26888612-26888866
Length = 607
Score = 28.7 bits (61), Expect = 6.1
Identities = 16/39 (41%), Positives = 19/39 (48%)
Frame = -1
Query: 576 IRRPVRSCLAMRRCSGSAGGCRFFR*SACLCVLDKCSRL 460
+R R A R C GSAG R R SA V+ + RL
Sbjct: 31 LRPAARLSFAPRWCGGSAGAARARRESAVTSVISRAPRL 69
>05_04_0389 -
20845490-20845600,20845697-20846006,20846097-20846242,
20846319-20846426,20846508-20846615,20846997-20847109,
20847340-20847437,20847530-20847714,20847811-20847953,
20848293-20848377,20848486-20848624,20848686-20848780,
20848894-20849037,20849114-20849206,20849310-20849376,
20849529-20849641,20849750-20849845,20853885-20854058
Length = 775
Score = 28.3 bits (60), Expect = 8.1
Identities = 18/57 (31%), Positives = 24/57 (42%)
Frame = +1
Query: 250 LRTVEAICPVLADWVGRDRGSLTSGYLCRLTRHFTTMQTSYRNKSYQPPRKLQFYGF 420
LR E I +A ++ R +GS S Y+ +F SY SY L Y F
Sbjct: 281 LRAPEDIAFAVALFIARKKGSFVSYYMYHGGTNFGRFAASYVTTSYYDGAPLDEYDF 337
>01_07_0074 -
40894916-40895754,40896322-40896691,40897239-40897291,
40897456-40897593,40897646-40897716,40898655-40898900,
40899205-40899386,40899494-40899697
Length = 700
Score = 28.3 bits (60), Expect = 8.1
Identities = 14/33 (42%), Positives = 19/33 (57%)
Frame = -2
Query: 155 APPRRTLCCGRSNQRRQRVFQSFSVLQISGFGF 57
APPRRT G++ + R R Q F+V Q G+
Sbjct: 48 APPRRTFSFGQAYKTRHRQPQVFTVWQTLMLGY 80
>01_01_0645 +
4890647-4890682,4891684-4891929,4892021-4892317,
4892407-4892574,4892674-4892841,4892924-4893004,
4893105-4893171,4893657-4893751,4894027-4894099,
4894177-4894247,4894325-4894374,4895263-4895375,
4895461-4895513
Length = 505
Score = 28.3 bits (60), Expect = 8.1
Identities = 13/41 (31%), Positives = 19/41 (46%)
Frame = +2
Query: 353 PPCKLLTATNLTSHHANYNFTGSTSLTRRYSHTEEANREHL 475
P C + N S H G+T L ++ ++T NR HL
Sbjct: 96 PSCSVGVYVNCGSVHEAPETLGATQLLKKMAYTTTTNRSHL 136
Database: rice
Posted date: Oct 4, 2007 10:57 AM
Number of letters in database: 14,793,348
Number of sequences in database: 37,544
Lambda K H
0.318 0.134 0.401
Gapped
Lambda K H
0.279 0.0580 0.190
Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 21,544,590
Number of Sequences: 37544
Number of extensions: 437910
Number of successful extensions: 1436
Number of sequences better than 10.0: 8
Number of HSP's better than 10.0 without gapping: 1394
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 1436
length of database: 14,793,348
effective HSP length: 81
effective length of database: 11,752,284
effective search space used: 2326952232
frameshift window, decay const: 40, 0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)
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