Bombyx BLAST Result against celegans

BLASTX 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= BmNP11_T7_F11
         (840 letters)

Database: celegans 
           27,780 sequences; 12,740,198 total letters

Searching..................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

Z81573-2|CAB04626.1|  294|Caenorhabditis elegans Hypothetical pr...    36   0.036
U80845-2|AAK39179.2|  582|Caenorhabditis elegans Hypothetical pr...    30   1.8  
Z69792-1|CAB61002.1|  605|Caenorhabditis elegans Hypothetical pr...    30   2.4  
D85744-1|BAA12861.1|  605|Caenorhabditis elegans HCH-1 protein.        30   2.4  
AC006720-9|AAF60443.2|  480|Caenorhabditis elegans Hypothetical ...    30   2.4  
U67956-2|AAB07691.2| 1254|Caenorhabditis elegans Dumpy : shorter...    29   5.4  
U39999-6|AAA81107.2|  198|Caenorhabditis elegans Hypothetical pr...    24   6.8  
U41541-3|AAK18894.1| 7829|Caenorhabditis elegans Hypothetical pr...    28   7.2  
AF000198-7|AAB53052.1|  418|Caenorhabditis elegans Collagen prot...    28   7.2  
Z82285-8|CAB05297.2|  393|Caenorhabditis elegans Hypothetical pr...    28   9.5  
AF023454-1|AAB82794.1|  707|Caenorhabditis elegans protein phosp...    28   9.5  
AF003389-11|AAC71139.2|  707|Caenorhabditis elegans Phosphatase ...    28   9.5  

>Z81573-2|CAB04626.1|  294|Caenorhabditis elegans Hypothetical
           protein M02G9.3 protein.
          Length = 294

 Score = 35.9 bits (79), Expect = 0.036
 Identities = 22/68 (32%), Positives = 34/68 (50%), Gaps = 2/68 (2%)
 Frame = +3

Query: 459 PTANTCQARTSTHFTGKTCIRQRNPNTAASPDTNAPDVLSYR--SRRLQMCQFFXPTETC 632
           P+ ++CQ+  S+  T  TCIR    N+ ++      +  + R  S+ LQ+C     T TC
Sbjct: 90  PSCSSCQSACSSACTTPTCIRTCQRNSCSNLCNTGSNSCTNRCNSQCLQICTTPSCTNTC 149

Query: 633 LLSCLLAC 656
             SC  AC
Sbjct: 150 SNSCSNAC 157


>U80845-2|AAK39179.2|  582|Caenorhabditis elegans Hypothetical
           protein C24A8.1 protein.
          Length = 582

 Score = 30.3 bits (65), Expect = 1.8
 Identities = 18/44 (40%), Positives = 25/44 (56%)
 Frame = +2

Query: 422 TSLTRRYSHTEEANREHLSSTHKHALHRKNLHPPAEPEHRRIAR 553
           TS  RR+SH  + NRE ++S     LH  +L PP   E R++ R
Sbjct: 334 TSRKRRHSHQPQGNREVVTSEESKKLH--SLKPPL-VEKRKMRR 374


>Z69792-1|CAB61002.1|  605|Caenorhabditis elegans Hypothetical
           protein F40E10.1 protein.
          Length = 605

 Score = 29.9 bits (64), Expect = 2.4
 Identities = 20/54 (37%), Positives = 22/54 (40%)
 Frame = +3

Query: 387 PATTQTTILRVPPLLHDVTPTLRKPTANTCQARTSTHFTGKTCIRQRNPNTAAS 548
           P TT TT    P  +  V+PT       T  ARTST     T   Q  P T  S
Sbjct: 478 PTTTSTTTTTAPITVPTVSPTTTTTRQTTTTARTST----TTTTTQAPPTTTTS 527


>D85744-1|BAA12861.1|  605|Caenorhabditis elegans HCH-1 protein.
          Length = 605

 Score = 29.9 bits (64), Expect = 2.4
 Identities = 20/54 (37%), Positives = 22/54 (40%)
 Frame = +3

Query: 387 PATTQTTILRVPPLLHDVTPTLRKPTANTCQARTSTHFTGKTCIRQRNPNTAAS 548
           P TT TT    P  +  V+PT       T  ARTST     T   Q  P T  S
Sbjct: 478 PTTTSTTTTTAPITVPTVSPTTTTTRQTTTTARTST----TTTTTQAPPTTTTS 527


>AC006720-9|AAF60443.2|  480|Caenorhabditis elegans Hypothetical
           protein Y17G9B.1 protein.
          Length = 480

 Score = 29.9 bits (64), Expect = 2.4
 Identities = 13/34 (38%), Positives = 20/34 (58%)
 Frame = -1

Query: 135 VLWQVQPETSTCVPELQCVTDKWFWLPLYVPFKV 34
           +LWQ+    +TC P LQ   ++W  L L + FK+
Sbjct: 421 ILWQL---ITTCKPRLQVDKERWIQLLLNIKFKI 451


>U67956-2|AAB07691.2| 1254|Caenorhabditis elegans Dumpy : shorter
           than wild-typeprotein 6 protein.
          Length = 1254

 Score = 28.7 bits (61), Expect = 5.4
 Identities = 16/58 (27%), Positives = 21/58 (36%)
 Frame = +3

Query: 384 LPATTQTTILRVPPLLHDVTPTLRKPTANTCQARTSTHFTGKTCIRQRNPNTAASPDT 557
           LP TT+ T+    P   + +   +KPT       T    T K       P T   P T
Sbjct: 591 LPFTTEQTVTTEEPTTAEKSTATQKPTTTQESVSTEKTSTTKKASTTEEPTTTDEPTT 648


>U39999-6|AAA81107.2|  198|Caenorhabditis elegans Hypothetical
           protein F41G3.10 protein.
          Length = 198

 Score = 24.2 bits (50), Expect(2) = 6.8
 Identities = 11/32 (34%), Positives = 13/32 (40%)
 Frame = +3

Query: 462 TANTCQARTSTHFTGKTCIRQRNPNTAASPDT 557
           T   C    +T  T  TC+   NP T  S  T
Sbjct: 83  TCGYCTGTATTTRTSTTCVDLTNPTTGVSDCT 114



 Score = 22.6 bits (46), Expect(2) = 6.8
 Identities = 11/33 (33%), Positives = 18/33 (54%)
 Frame = +3

Query: 312 SHVRLPVQTHKTFYHHANFLPQQILPATTQTTI 410
           S + + V   +TF      L QQ+L  TT+T++
Sbjct: 10  SLLEVVVALMETFSQSPQHLQQQLLSTTTRTSV 42


>U41541-3|AAK18894.1| 7829|Caenorhabditis elegans Hypothetical protein
            C41A3.1 protein.
          Length = 7829

 Score = 28.3 bits (60), Expect = 7.2
 Identities = 22/77 (28%), Positives = 30/77 (38%), Gaps = 4/77 (5%)
 Frame = +3

Query: 438  VTPTLRKPTANTCQARTSTHFTGKTCIRQRNPNTAASPDTNAPDVLSYRSR----RLQMC 605
            +T  L+K       A     FT KT  R  +  T         DV+   +     RL+  
Sbjct: 7251 ITDQLQKCQYAFLPAAVFNGFTDKTMSRLESIETLTIGGETVSDVVIETAMKKFPRLRTI 7310

Query: 606  QFFXPTETCLLSCLLAC 656
            Q + PTETC+ S    C
Sbjct: 7311 QIYGPTETCIWSLTNKC 7327


>AF000198-7|AAB53052.1|  418|Caenorhabditis elegans Collagen protein
           50 protein.
          Length = 418

 Score = 28.3 bits (60), Expect = 7.2
 Identities = 16/33 (48%), Positives = 17/33 (51%), Gaps = 1/33 (3%)
 Frame = +3

Query: 120 GPATAQCPTRRRTL-AQVQPERGAPISAVRAGG 215
           GP  A CP   RTL A   PE G   +A  AGG
Sbjct: 292 GPDAAYCPCPPRTLGAGAYPEGGDAAAAAPAGG 324


>Z82285-8|CAB05297.2|  393|Caenorhabditis elegans Hypothetical
           protein T28F3.3 protein.
          Length = 393

 Score = 27.9 bits (59), Expect = 9.5
 Identities = 28/88 (31%), Positives = 38/88 (43%), Gaps = 3/88 (3%)
 Frame = +2

Query: 389 SHHANYNFTGSTSLTRR--YSHTEEANREHLSSTHKHALHRKNLHPPAEPEHRRIARHER 562
           SH  ++   GS  LT+     H+EE +  H    H H  H + L       HR I +H R
Sbjct: 22  SHEHHHEGDGSEILTKVGWNDHSEELHDHH---EHDHDHHDEQLIRKNHTSHREI-QHSR 77

Query: 563 TGRLILQVTTTSD-VSIFLXHGNLLAFL 643
              L + V + S  V I L    LL F+
Sbjct: 78  LSTLKVWVFSLSAVVGISLAPCTLLFFI 105


>AF023454-1|AAB82794.1|  707|Caenorhabditis elegans protein
           phosphatase with EF-hands protein.
          Length = 707

 Score = 27.9 bits (59), Expect = 9.5
 Identities = 15/68 (22%), Positives = 31/68 (45%), Gaps = 2/68 (2%)
 Frame = +2

Query: 338 SQDILPPCKLLTATNLTSHHANYNFTG--STSLTRRYSHTEEANREHLSSTHKHALHRKN 511
           S ++    +  T T  +S   NYN     ++S +     +  ++++H S   K +  +KN
Sbjct: 13  STELKKSTRATTTTTSSSQRNNYNDNNQNTSSSSGNKKESSSSSKQHSSKKSKKSNSKKN 72

Query: 512 LHPPAEPE 535
             P  +P+
Sbjct: 73  RSPSPQPQ 80


>AF003389-11|AAC71139.2|  707|Caenorhabditis elegans Phosphatase
           with ef hands protein1, isoform a protein.
          Length = 707

 Score = 27.9 bits (59), Expect = 9.5
 Identities = 15/68 (22%), Positives = 31/68 (45%), Gaps = 2/68 (2%)
 Frame = +2

Query: 338 SQDILPPCKLLTATNLTSHHANYNFTG--STSLTRRYSHTEEANREHLSSTHKHALHRKN 511
           S ++    +  T T  +S   NYN     ++S +     +  ++++H S   K +  +KN
Sbjct: 13  STELKKSTRATTTTTSSSQRNNYNDNNQNTSSSSGNKKESSSSSKQHSSKKSKKSNSKKN 72

Query: 512 LHPPAEPE 535
             P  +P+
Sbjct: 73  RSPSPQPQ 80


  Database: celegans
    Posted date:  Oct 23, 2007  1:18 PM
  Number of letters in database: 12,740,198
  Number of sequences in database:  27,780
  
Lambda     K      H
   0.318    0.134    0.401 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 17,385,475
Number of Sequences: 27780
Number of extensions: 347694
Number of successful extensions: 1127
Number of sequences better than 10.0: 12
Number of HSP's better than 10.0 without gapping: 1045
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 1122
length of database: 12,740,198
effective HSP length: 81
effective length of database: 10,490,018
effective search space used: 2077023564
frameshift window, decay const: 40,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)