Bombyx BLAST Result against spombe

BLASTX 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= BmNP11_T7_F08
         (803 letters)

Database: spombe 
           5004 sequences; 2,362,478 total letters

Searching..................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

SPAPB1E7.04c |||chitinase |Schizosaccharomyces pombe|chr 1|||Manual    29   0.77 
SPBPJ4664.02 |||glycoprotein |Schizosaccharomyces pombe|chr 2|||...    27   4.1  
SPBC19G7.05c |bgs1|cps1, drc1|1,3-beta-glucan synthase catalytic...    26   5.5  
SPAC1039.08 |||serine acetyltransferase |Schizosaccharomyces pom...    26   5.5  

>SPAPB1E7.04c |||chitinase |Schizosaccharomyces pombe|chr 1|||Manual
          Length = 1236

 Score = 29.1 bits (62), Expect = 0.77
 Identities = 22/83 (26%), Positives = 38/83 (45%), Gaps = 4/83 (4%)
 Frame = -3

Query: 354  TAPPEGNGASRTAPVAGAVNVDLGSVLSASDVVS--TASAPENAVRLAPHLPAQDDAANQ 181
            T+  EG  +S  A  A A  +   +   +S V S  TAS+  +A   A      D  +N 
Sbjct: 1101 TSSVEGTASSTIAAAASAATLSSDAASGSSTVTSSATASSSSSAATTADSSVTTDTPSND 1160

Query: 180  FSSAVGSGQMGPV--MSQFGLPS 118
            F++ V +  +  V  +S + +P+
Sbjct: 1161 FNANVDTAGLWYVSALSSYSVPA 1183


>SPBPJ4664.02 |||glycoprotein |Schizosaccharomyces pombe|chr
            2|||Manual
          Length = 3971

 Score = 26.6 bits (56), Expect = 4.1
 Identities = 14/67 (20%), Positives = 31/67 (46%)
 Frame = -3

Query: 369  FSELGTAPPEGNGASRTAPVAGAVNVDLGSVLSASDVVSTASAPENAVRLAPHLPAQDDA 190
            +S   +   + +    +  V+ A  +  GSVLS++  + + S   +   +   L + D +
Sbjct: 3578 YSRFSSGSLDSSSVFNSTTVSTASGISQGSVLSSTRAIESESTASHRSSVLSELSSYDLS 3637

Query: 189  ANQFSSA 169
             + FSS+
Sbjct: 3638 TSAFSSS 3644


>SPBC19G7.05c |bgs1|cps1, drc1|1,3-beta-glucan synthase catalytic
            subunit Bgs1|Schizosaccharomyces pombe|chr 2|||Manual
          Length = 1729

 Score = 26.2 bits (55), Expect = 5.5
 Identities = 15/48 (31%), Positives = 23/48 (47%), Gaps = 3/48 (6%)
 Frame = +2

Query: 191  ASSWAGRCGASRTAFSGAEAVDTTSEADRTL---PRSTLTAPATGAVL 325
            A+SW G C   RT  +G +      +AD+     PR+ +T    G +L
Sbjct: 1397 ANSWIGNCQLCRTRVTGYKRKIYGKKADKIAMDSPRARITTMFYGEIL 1444


>SPAC1039.08 |||serine acetyltransferase |Schizosaccharomyces
           pombe|chr 1|||Manual
          Length = 270

 Score = 26.2 bits (55), Expect = 5.5
 Identities = 15/49 (30%), Positives = 23/49 (46%)
 Frame = -3

Query: 273 SASDVVSTASAPENAVRLAPHLPAQDDAANQFSSAVGSGQMGPVMSQFG 127
           + + V+      ENAV  A  L  +D A N+ +    +  +GPV   FG
Sbjct: 212 TGATVLGRVEVGENAVVAAGALVTKDVAPNRLALGSPARDVGPVPQYFG 260


  Database: spombe
    Posted date:  Oct 4, 2007 10:57 AM
  Number of letters in database: 2,362,478
  Number of sequences in database:  5004
  
Lambda     K      H
   0.318    0.134    0.401 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 2,561,615
Number of Sequences: 5004
Number of extensions: 48516
Number of successful extensions: 148
Number of sequences better than 10.0: 4
Number of HSP's better than 10.0 without gapping: 144
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 148
length of database: 2,362,478
effective HSP length: 72
effective length of database: 2,002,190
effective search space used: 390427050
frameshift window, decay const: 40,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)