Last updated: 2022/11/18
BLASTX 2.2.12 [Aug-07-2005]
Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer,
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997),
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs", Nucleic Acids Res. 25:3389-3402.
Query= BmNP11_T7_F08
(803 letters)
Database: rice
37,544 sequences; 14,793,348 total letters
Searching..................................................done
Score E
Sequences producing significant alignments: (bits) Value
09_04_0038 - 13996505-13996836,13997047-13997077,13997307-139974... 32 0.46
11_01_0435 + 3337840-3338494,3338950-3339313,3339733-3340009 31 1.4
10_06_0002 + 9382559-9382937,9383008-9383180,9386752-9386901,938... 31 1.4
08_02_1493 + 27512473-27512557,27512670-27513351,27513459-275135... 30 2.5
07_03_0537 - 19218461-19218982,19219482-19219868,19219993-192201... 30 2.5
03_03_0144 + 14826797-14827435,14827561-14827771,14827861-148281... 29 3.3
05_06_0043 + 25143513-25143866,25144010-25144191,25144284-251443... 29 4.3
09_04_0117 + 14813472-14814113,14814194-14814404,14814552-148148... 29 5.7
05_01_0462 - 3658153-3658290,3658394-3658540,3658622-3658720,365... 28 7.6
03_06_0209 - 32377045-32378008,32378086-32378210,32378772-323788... 28 7.6
02_04_0053 - 19276891-19277079,19277947-19278073,19278320-192784... 28 10.0
02_03_0406 + 18663986-18664059,18665082-18665405,18665499-186655... 28 10.0
02_01_0325 - 2208480-2208674,2208772-2210609,2210980-2211109,221... 28 10.0
01_01_0958 + 7518784-7519388,7520387-7520450,7520737-7520850 28 10.0
>09_04_0038 -
13996505-13996836,13997047-13997077,13997307-13997420,
13997546-13997686,13997787-13997851,13997943-13998039,
13998096-13998257,13998360-13998473,14001263-14001311,
14001967-14002047,14003504-14003561,14003671-14004031,
14004129-14004213,14004320-14004591,14004712-14004914,
14005419-14005494
Length = 746
Score = 32.3 bits (70), Expect = 0.46
Identities = 24/85 (28%), Positives = 35/85 (41%)
Frame = -3
Query: 339 GNGASRTAPVAGAVNVDLGSVLSASDVVSTASAPENAVRLAPHLPAQDDAANQFSSAVGS 160
G A+ + A L S S+S + A+ E PH A D A Q +S V +
Sbjct: 32 GGAAAAAMDWSFASRAALMSFRSSSSAAAAAAREETRELAFPHFSALDGAKMQQASHVLA 91
Query: 159 GQMGPVMSQFGLPSEVSSAANNGKH 85
Q G+P ++AA +G H
Sbjct: 92 RQKSFGAESHGIPQYAAAAAVHGAH 116
>11_01_0435 + 3337840-3338494,3338950-3339313,3339733-3340009
Length = 431
Score = 30.7 bits (66), Expect = 1.4
Identities = 25/84 (29%), Positives = 32/84 (38%), Gaps = 1/84 (1%)
Frame = -2
Query: 364 RTRHSSAGRE-RCVKDGPRSWCSQCRSGQRSVSFRRSVYCFGPGECRATGATPARPGRCR 188
R+ AGR RCV DG C + S+ G C A+ + P P C+
Sbjct: 278 RSAGDEAGRNPRCVADGNELLRFHCTTFACSLGLAG-----GTALCCASSSPP--PLHCK 330
Query: 187 KSVFFSGGFRTDGASNVTIRLTVG 116
GFR DG +T T G
Sbjct: 331 LCSIIKDGFRVDGNGRITTMATSG 354
>10_06_0002 +
9382559-9382937,9383008-9383180,9386752-9386901,
9387180-9387325,9387416-9387572,9387720-9387778,
9388204-9388360,9389001-9389150,9389280-9389416,
9390071-9390217,9390292-9390393,9390742-9390799,
9391997-9392034,9392124-9392250,9392320-9392493,
9393125-9393256,9393940-9394049,9394752-9394812,
9395036-9395213,9395326-9395531,9395796-9395915,
9396496-9396594,9396983-9397204,9397482-9397621,
9397741-9397852,9398021-9398071,9398151-9398240,
9398397-9398567,9398663-9398815,9399774-9399950,
9400045-9400182,9400295-9400365,9400739-9400838,
9401324-9401380,9401469-9401525,9401619-9401699,
9401782-9401864,9401975-9402110
Length = 1632
Score = 30.7 bits (66), Expect = 1.4
Identities = 21/58 (36%), Positives = 26/58 (44%)
Frame = -2
Query: 361 TRHSSAGRERCVKDGPRSWCSQCRSGQRSVSFRRSVYCFGPGECRATGATPARPGRCR 188
TR S+A E +GP W + G R+ + RR G GE RA A RCR
Sbjct: 69 TRESAAAGEPRAGEGPGGWEGRRSGGGRAPARRR-----GGGETRAVPGRQAAVQRCR 121
>08_02_1493 +
27512473-27512557,27512670-27513351,27513459-27513522,
27513734-27513961
Length = 352
Score = 29.9 bits (64), Expect = 2.5
Identities = 19/75 (25%), Positives = 28/75 (37%), Gaps = 3/75 (4%)
Frame = -2
Query: 523 SCDTRSRRYRAHTYCCNRHNHGHNDCHTTQYCQ---CSCPE*KRTNIPVGSAALLFRTRH 353
+C + + YCCN + CH +QY Q +CP K + A F H
Sbjct: 184 ACRSACEAFGRPEYCCNGAYGNPDTCHPSQYSQLFKSACP--KSYSYAYDDATSTFTCNH 241
Query: 352 SSAGRERCVKDGPRS 308
+ C + P S
Sbjct: 242 TDYTITFCPRSTPSS 256
>07_03_0537 - 19218461-19218982,19219482-19219868,19219993-19220154,
19220464-19221117,19221233-19221277,19223300-19223845,
19223930-19224307,19224642-19225313,19225373-19225456
Length = 1149
Score = 29.9 bits (64), Expect = 2.5
Identities = 18/43 (41%), Positives = 26/43 (60%), Gaps = 5/43 (11%)
Frame = +3
Query: 87 VSRYLQQMRLP-----TVSRIVTLLAPSVRNPPLKKTDLRHRP 200
V+R+L+Q RLP ++SRI L+ S PPLK+ D +P
Sbjct: 987 VARFLEQHRLPAELATSLSRIRGLIEASPPAPPLKRGDAAPQP 1029
>03_03_0144 +
14826797-14827435,14827561-14827771,14827861-14828155,
14828285-14828674,14829131-14829208,14829296-14829518
Length = 611
Score = 29.5 bits (63), Expect = 3.3
Identities = 17/57 (29%), Positives = 25/57 (43%)
Frame = -3
Query: 402 GQIFLSDLQRYFSELGTAPPEGNGASRTAPVAGAVNVDLGSVLSASDVVSTASAPEN 232
G F +Y L + P NG RTA G LG+ L +V++ + AP +
Sbjct: 179 GTQFPQGADKYIDHLASVIPIANGKVRTALDTGCGVASLGAYLLKKNVLTMSFAPRD 235
>05_06_0043 +
25143513-25143866,25144010-25144191,25144284-25144374,
25144452-25144568,25144922-25144976,25145008-25145093,
25145190-25145300,25145564-25145608,25145695-25145740,
25146078-25146152,25146902-25146971,25147128-25147437,
25147778-25147851,25147996-25148151,25148416-25148539
Length = 631
Score = 29.1 bits (62), Expect = 4.3
Identities = 14/30 (46%), Positives = 17/30 (56%)
Frame = -2
Query: 403 RTNIPVGSAALLFRTRHSSAGRERCVKDGP 314
R +I GSA+L FR R +S RC D P
Sbjct: 25 RPSIHAGSASLTFRARPNSVSIVRCDADSP 54
>09_04_0117 +
14813472-14814113,14814194-14814404,14814552-14814846,
14815059-14815448,14815528-14815605,14815692-14815926
Length = 616
Score = 28.7 bits (61), Expect = 5.7
Identities = 16/58 (27%), Positives = 26/58 (44%)
Frame = -3
Query: 402 GQIFLSDLQRYFSELGTAPPEGNGASRTAPVAGAVNVDLGSVLSASDVVSTASAPENA 229
G F +Y +L + P NG RTA G G+ L +V++ + AP ++
Sbjct: 180 GTQFPQGADKYIDQLASVVPIANGTVRTALDTGCGVASWGAYLLKRNVLAMSFAPRDS 237
>05_01_0462 -
3658153-3658290,3658394-3658540,3658622-3658720,
3658802-3659253,3659597-3660280,3662072-3662180
Length = 542
Score = 28.3 bits (60), Expect = 7.6
Identities = 30/123 (24%), Positives = 41/123 (33%), Gaps = 8/123 (6%)
Frame = -2
Query: 472 RHNHGHNDCHTTQYCQCSCPE*K--------RTNIPVGSAALLFRTRHSSAGRERCVKDG 317
R H H+ H Q +CP N P GSA + R R + R + G
Sbjct: 207 RGRHDHSTIHLEQSPAAACPSSSINVPPYHPNANGPFGSAPVQ-RDRAPLSVHPRILPPG 265
Query: 316 PRSWCSQCRSGQRSVSFRRSVYCFGPGECRATGATPARPGRCRKSVFFSGGFRTDGASNV 137
P S++FR Y P + P P C + F GG+ A
Sbjct: 266 PDG---------SSIAFRERPYYPAPQSTNISAPVPTLPISCDSAPFAHGGYAPRSAHRN 316
Query: 136 TIR 128
+R
Sbjct: 317 NLR 319
>03_06_0209 -
32377045-32378008,32378086-32378210,32378772-32378816,
32379009-32379295,32379778-32381509,32381631-32381971,
32383753-32383876,32384484-32384722,32385156-32385534
Length = 1411
Score = 28.3 bits (60), Expect = 7.6
Identities = 25/95 (26%), Positives = 37/95 (38%), Gaps = 2/95 (2%)
Frame = +2
Query: 65 VP*RRLQCFPLFAADETSDGKPNCDITGPICPEPTAEEN*FAASSWAGRCGASRTAF--S 238
+P +R + F LF + S + C +P A+ F+ + AG R + S
Sbjct: 621 IPNKRSRGFDLFGSYLPSSS--GAGPSRNFCFDPDADAGKFSHARAAGLAAVDRDSMRES 678
Query: 239 GAEAVDTTSEADRTLPRSTLTAPATGAVLDAPFPS 343
A+DT AD S P G +D P S
Sbjct: 679 SVAAMDTVHSADEDSMESVEYYPGDGNDIDMPSSS 713
>02_04_0053 -
19276891-19277079,19277947-19278073,19278320-19278435,
19279089-19279382
Length = 241
Score = 27.9 bits (59), Expect = 10.0
Identities = 13/44 (29%), Positives = 23/44 (52%)
Frame = -3
Query: 198 DDAANQFSSAVGSGQMGPVMSQFGLPSEVSSAANNGKH*SRLQG 67
+D ++A GSG + ++S G P+ V++A G + QG
Sbjct: 132 EDIQGSMAAAFGSGALFSIVSGMGTPNPVANAITTGAAFAIFQG 175
>02_03_0406 + 18663986-18664059,18665082-18665405,18665499-18665559,
18666136-18666282,18666368-18666492,18666619-18666648,
18666689-18666893,18667532-18667741,18667886-18667888,
18670034-18670942,18671239-18672069
Length = 972
Score = 27.9 bits (59), Expect = 10.0
Identities = 18/50 (36%), Positives = 24/50 (48%), Gaps = 1/50 (2%)
Frame = +3
Query: 81 FNVSRYLQQMRLPTVSRIVTLLAPSVR-NPPLKKTDLRHRPGRAGVAPVA 227
FN+S + +PT+ + T S NP L L HR AG APV+
Sbjct: 886 FNISYNDLEGPVPTIGQFSTFPTSSFAGNPKLCSPMLLHRCNSAGAAPVS 935
>02_01_0325 -
2208480-2208674,2208772-2210609,2210980-2211109,
2211231-2211270,2211409-2211531,2211940-2212030,
2212396-2212480,2212565-2212720,2212797-2212853,
2212940-2213110,2213313-2213330,2213479-2213551,
2213754-2213839,2214348-2214466,2214542-2214641
Length = 1093
Score = 27.9 bits (59), Expect = 10.0
Identities = 8/16 (50%), Positives = 11/16 (68%)
Frame = +3
Query: 393 IFVRFYSGQEHWQYWV 440
+ V + SG EHW YW+
Sbjct: 78 VLVHYQSGWEHWAYWL 93
>01_01_0958 + 7518784-7519388,7520387-7520450,7520737-7520850
Length = 260
Score = 27.9 bits (59), Expect = 10.0
Identities = 21/55 (38%), Positives = 26/55 (47%), Gaps = 2/55 (3%)
Frame = -3
Query: 366 SELGTAPP--EGNGASRTAPVAGAVNVDLGSVLSASDVVSTASAPENAVRLAPHL 208
++L APP +G A AP A V G+ V TAS +AV LAP L
Sbjct: 21 ADLAHAPPPHDGGAAEDDAPAVAAALV-AGAPAHHRHVTHTASGRAHAVLLAPPL 74
Database: rice
Posted date: Oct 4, 2007 10:57 AM
Number of letters in database: 14,793,348
Number of sequences in database: 37,544
Lambda K H
0.318 0.134 0.401
Gapped
Lambda K H
0.279 0.0580 0.190
Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 18,646,588
Number of Sequences: 37544
Number of extensions: 403205
Number of successful extensions: 1487
Number of sequences better than 10.0: 14
Number of HSP's better than 10.0 without gapping: 1420
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 1480
length of database: 14,793,348
effective HSP length: 81
effective length of database: 11,752,284
effective search space used: 2185924824
frameshift window, decay const: 40, 0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)
- SilkBase 1999-2023 -