Last updated: 2022/11/18
BLASTX 2.2.12 [Aug-07-2005]
Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer,
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997),
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs", Nucleic Acids Res. 25:3389-3402.
Query= BmNP11_T7_F06
(743 letters)
Database: celegans
27,780 sequences; 12,740,198 total letters
Searching..................................................done
Score E
Sequences producing significant alignments: (bits) Value
AC024798-8|AAK29921.3| 1115|Caenorhabditis elegans Hypothetical ... 29 2.6
U10438-9|AAU87834.1| 616|Caenorhabditis elegans Hypothetical pr... 29 4.6
Z48367-4|CAA88324.1| 1110|Caenorhabditis elegans Hypothetical pr... 25 5.0
Z48367-5|CAE54886.1| 993|Caenorhabditis elegans Hypothetical pr... 25 5.0
U88309-2|AAB42334.1| 211|Caenorhabditis elegans Hypothetical pr... 28 6.1
U39852-7|AAK39260.1| 240|Caenorhabditis elegans Ground-like (gr... 28 6.1
AF000299-1|AAC47980.1| 210|Caenorhabditis elegans Hypothetical ... 28 6.1
AC024847-11|AAO21416.1| 453|Caenorhabditis elegans Ground-like ... 24 7.0
AC024847-10|AAF60859.1| 393|Caenorhabditis elegans Ground-like ... 24 7.0
>AC024798-8|AAK29921.3| 1115|Caenorhabditis elegans Hypothetical
protein Y48G9A.4 protein.
Length = 1115
Score = 29.5 bits (63), Expect = 2.6
Identities = 17/64 (26%), Positives = 21/64 (32%), Gaps = 1/64 (1%)
Frame = +1
Query: 532 RP-PPTXXXXRPSPXLXGXVXXSXXXXXXXXPPXSXXXXXXXXXPXPXXCXXXXVPXHPP 708
RP PP P P + G + + PP P P + PP
Sbjct: 532 RPAPPPVSSIPPPPPIAGLLAANGTNVPIPPPPPPPLPQNLSGAPPPPPPPPPMLGGPPP 591
Query: 709 PPPP 720
PPPP
Sbjct: 592 PPPP 595
>U10438-9|AAU87834.1| 616|Caenorhabditis elegans Hypothetical
protein B0280.13 protein.
Length = 616
Score = 28.7 bits (61), Expect = 4.6
Identities = 11/29 (37%), Positives = 12/29 (41%)
Frame = +2
Query: 482 KKPPPPXXXXXXXSPXXAPPXPXXPXXXP 568
K PPPP +P PP P P P
Sbjct: 494 KSPPPPPPLPPIATPSSVPPPPPPPPPPP 522
>Z48367-4|CAA88324.1| 1110|Caenorhabditis elegans Hypothetical
protein C33B4.3a protein.
Length = 1110
Score = 25.4 bits (53), Expect(2) = 5.0
Identities = 9/20 (45%), Positives = 10/20 (50%)
Frame = +1
Query: 661 PXPXXCXXXXVPXHPPPPPP 720
P P +P PPPPPP
Sbjct: 754 PQPIQQQQSSIPPPPPPPPP 773
Score = 21.4 bits (43), Expect(2) = 5.0
Identities = 7/12 (58%), Positives = 8/12 (66%)
Frame = +1
Query: 703 PPPPPPXXXXLV 738
PPPPPP L+
Sbjct: 809 PPPPPPPPGGLM 820
>Z48367-5|CAE54886.1| 993|Caenorhabditis elegans Hypothetical
protein C33B4.3b protein.
Length = 993
Score = 25.4 bits (53), Expect(2) = 5.0
Identities = 9/20 (45%), Positives = 10/20 (50%)
Frame = +1
Query: 661 PXPXXCXXXXVPXHPPPPPP 720
P P +P PPPPPP
Sbjct: 754 PQPIQQQQSSIPPPPPPPPP 773
Score = 21.4 bits (43), Expect(2) = 5.0
Identities = 7/12 (58%), Positives = 8/12 (66%)
Frame = +1
Query: 703 PPPPPPXXXXLV 738
PPPPPP L+
Sbjct: 809 PPPPPPPPGGLM 820
>U88309-2|AAB42334.1| 211|Caenorhabditis elegans Hypothetical
protein T23B3.5 protein.
Length = 211
Score = 28.3 bits (60), Expect = 6.1
Identities = 12/29 (41%), Positives = 12/29 (41%)
Frame = +2
Query: 482 KKPPPPXXXXXXXSPXXAPPXPXXPXXXP 568
KKPPPP P AP P P P
Sbjct: 27 KKPPPPKSASKMGPPPPAPAPPTAPEAAP 55
>U39852-7|AAK39260.1| 240|Caenorhabditis elegans Ground-like (grd
related) protein 6 protein.
Length = 240
Score = 28.3 bits (60), Expect = 6.1
Identities = 11/29 (37%), Positives = 11/29 (37%)
Frame = +2
Query: 488 PPPPXXXXXXXSPXXAPPXPXXPXXXPXP 574
PPPP P PP P P P P
Sbjct: 56 PPPPCPAQFCPPPPICPPPPPPPMPCPPP 84
>AF000299-1|AAC47980.1| 210|Caenorhabditis elegans Hypothetical
protein E03H12.5 protein.
Length = 210
Score = 28.3 bits (60), Expect = 6.1
Identities = 12/29 (41%), Positives = 12/29 (41%)
Frame = +2
Query: 482 KKPPPPXXXXXXXSPXXAPPXPXXPXXXP 568
KKPPPP P AP P P P
Sbjct: 27 KKPPPPKSASKMGPPPPAPAPPTAPEATP 55
>AC024847-11|AAO21416.1| 453|Caenorhabditis elegans Ground-like
(grd related) protein16, isoform b protein.
Length = 453
Score = 23.8 bits (49), Expect(2) = 7.0
Identities = 8/9 (88%), Positives = 8/9 (88%)
Frame = +3
Query: 693 ALXPPPPPP 719
AL PPPPPP
Sbjct: 61 ALPPPPPPP 69
Score = 22.6 bits (46), Expect(2) = 7.0
Identities = 7/12 (58%), Positives = 8/12 (66%)
Frame = +3
Query: 702 PPPPPPXXXXLG 737
PPPPPP +G
Sbjct: 63 PPPPPPPPAPIG 74
>AC024847-10|AAF60859.1| 393|Caenorhabditis elegans Ground-like
(grd related) protein16, isoform a protein.
Length = 393
Score = 23.8 bits (49), Expect(2) = 7.0
Identities = 8/9 (88%), Positives = 8/9 (88%)
Frame = +3
Query: 693 ALXPPPPPP 719
AL PPPPPP
Sbjct: 61 ALPPPPPPP 69
Score = 22.6 bits (46), Expect(2) = 7.0
Identities = 7/12 (58%), Positives = 8/12 (66%)
Frame = +3
Query: 702 PPPPPPXXXXLG 737
PPPPPP +G
Sbjct: 63 PPPPPPPPAPIG 74
Database: celegans
Posted date: Oct 23, 2007 1:18 PM
Number of letters in database: 12,740,198
Number of sequences in database: 27,780
Lambda K H
0.318 0.134 0.401
Gapped
Lambda K H
0.279 0.0580 0.190
Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 9,768,209
Number of Sequences: 27780
Number of extensions: 183791
Number of successful extensions: 2901
Number of sequences better than 10.0: 10
Number of HSP's better than 10.0 without gapping: 573
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 2113
length of database: 12,740,198
effective HSP length: 80
effective length of database: 10,517,798
effective search space used: 1756472266
frameshift window, decay const: 40, 0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)
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