Bombyx BLAST Result against rice

BLASTX 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= BmNP11_T7_F04
         (789 letters)

Database: rice 
           37,544 sequences; 14,793,348 total letters

Searching..................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

01_03_0005 + 11568545-11569119,11569179-11569191                       30   2.4  
11_01_0422 + 3246528-3248606                                           28   7.4  

>01_03_0005 + 11568545-11569119,11569179-11569191
          Length = 195

 Score = 29.9 bits (64), Expect = 2.4
 Identities = 19/61 (31%), Positives = 20/61 (32%)
 Frame = +1

Query: 364 PPPSXXXGXRXIXFPXGGFXXXPPGGGKKKXKXXXXXEKXGGGVXPXPFXPPPKIXAGFS 543
           PPP    G        GG    PP GG             GGG  P P  PPP     + 
Sbjct: 93  PPPPYSGGGGGSSTGGGGIYYPPPTGGGGGGGGGWQQGGGGGGAYPTP--PPPNPFLPYF 150

Query: 544 P 546
           P
Sbjct: 151 P 151



 Score = 28.3 bits (60), Expect = 7.4
 Identities = 16/46 (34%), Positives = 19/46 (41%)
 Frame = +2

Query: 365 PPPXFXXEXGXSXFPXGVFXFXPRGGGKKXXXXXLXGKXGGGGXFP 502
           PPP      G S    G++   P GGG         G  GGGG +P
Sbjct: 94  PPPYSGGGGGSSTGGGGIYYPPPTGGGGGGGGGWQQG-GGGGGAYP 138


>11_01_0422 + 3246528-3248606
          Length = 692

 Score = 28.3 bits (60), Expect = 7.4
 Identities = 12/21 (57%), Positives = 13/21 (61%)
 Frame = -2

Query: 545 GENPAXIFGGGXKGXGXTPPP 483
           G +PA   GGG  G G TPPP
Sbjct: 220 GGDPASDGGGGGGGGGDTPPP 240


  Database: rice
    Posted date:  Oct 4, 2007 10:57 AM
  Number of letters in database: 14,793,348
  Number of sequences in database:  37,544
  
Lambda     K      H
   0.318    0.134    0.401 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 12,447,680
Number of Sequences: 37544
Number of extensions: 287933
Number of successful extensions: 655
Number of sequences better than 10.0: 2
Number of HSP's better than 10.0 without gapping: 487
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 627
length of database: 14,793,348
effective HSP length: 81
effective length of database: 11,752,284
effective search space used: 2127163404
frameshift window, decay const: 40,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)