Bombyx BLAST Result against celegans

BLASTX 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= BmNP11_T7_F04
         (789 letters)

Database: celegans 
           27,780 sequences; 12,740,198 total letters

Searching..................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

AF003151-19|AAK18922.1|  988|Caenorhabditis elegans Hypothetical...    29   5.0  
AF025467-2|AAN65301.1|  505|Caenorhabditis elegans Hypothetical ...    28   6.6  
AF025467-1|AAB71039.2|  528|Caenorhabditis elegans Hypothetical ...    28   6.6  

>AF003151-19|AAK18922.1|  988|Caenorhabditis elegans Hypothetical
           protein D1007.7 protein.
          Length = 988

 Score = 28.7 bits (61), Expect = 5.0
 Identities = 17/47 (36%), Positives = 18/47 (38%)
 Frame = -1

Query: 552 FFGGKPRPNFWGXXKRXGXXPPPPFFPXXXXFXFFFPPPRGXXXKTP 412
           F   KP P  +      G  PPPPF         F PPPRG     P
Sbjct: 737 FDPNKPPPPMFQQGFNAGA-PPPPFGRGAGPMSSFPPPPRGGMHHMP 782


>AF025467-2|AAN65301.1|  505|Caenorhabditis elegans Hypothetical
           protein R148.5b protein.
          Length = 505

 Score = 28.3 bits (60), Expect = 6.6
 Identities = 18/61 (29%), Positives = 19/61 (31%)
 Frame = -1

Query: 537 PRPNFWGXXKRXGXXPPPPFFPXXXXFXFFFPPPRGXXXKTPXGKXDXPXSXXXXGGGXX 358
           P   F+    R    PPPP F        F PPP       P G    P      GG   
Sbjct: 291 PPFGFFPPPPRGHFPPPPPHFMGRGMPPPFMPPPPHFGMGPPRGFMPPPHPMMFRGGPYP 350

Query: 357 P 355
           P
Sbjct: 351 P 351


>AF025467-1|AAB71039.2|  528|Caenorhabditis elegans Hypothetical
           protein R148.5a protein.
          Length = 528

 Score = 28.3 bits (60), Expect = 6.6
 Identities = 18/61 (29%), Positives = 19/61 (31%)
 Frame = -1

Query: 537 PRPNFWGXXKRXGXXPPPPFFPXXXXFXFFFPPPRGXXXKTPXGKXDXPXSXXXXGGGXX 358
           P   F+    R    PPPP F        F PPP       P G    P      GG   
Sbjct: 291 PPFGFFPPPPRGHFPPPPPHFMGRGMPPPFMPPPPHFGMGPPRGFMPPPHPMMFRGGPYP 350

Query: 357 P 355
           P
Sbjct: 351 P 351


  Database: celegans
    Posted date:  Oct 23, 2007  1:18 PM
  Number of letters in database: 12,740,198
  Number of sequences in database:  27,780
  
Lambda     K      H
   0.318    0.134    0.401 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 8,368,664
Number of Sequences: 27780
Number of extensions: 173275
Number of successful extensions: 304
Number of sequences better than 10.0: 3
Number of HSP's better than 10.0 without gapping: 225
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 295
length of database: 12,740,198
effective HSP length: 80
effective length of database: 10,517,798
effective search space used: 1914239236
frameshift window, decay const: 40,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)