Bombyx BLAST Result against spombe

BLASTX 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= BmNP11_T7_E23
         (803 letters)

Database: spombe 
           5004 sequences; 2,362,478 total letters

Searching..................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

SPAC23A1.17 |||WIP homolog|Schizosaccharomyces pombe|chr 1|||Manual    31   0.25 
SPAC4F10.15c |wsp1||WASp homolog|Schizosaccharomyces pombe|chr 1...    27   4.1  
SPBC13E7.09 |vrp1||verprolin|Schizosaccharomyces pombe|chr 2|||M...    26   5.5  
SPBC146.07 |prp2|mis11|U2AF large subunit |Schizosaccharomyces p...    26   7.2  

>SPAC23A1.17 |||WIP homolog|Schizosaccharomyces pombe|chr 1|||Manual
          Length = 1611

 Score = 30.7 bits (66), Expect = 0.25
 Identities = 21/86 (24%), Positives = 22/86 (25%)
 Frame = -1

Query: 707  PAXXXXPPXXXXXXXXPXPXXXPPPXQXPPPXXXXRXPXXXXXXGXXXXXRPPXXXPPVX 528
            PA    PP        P P   P     P P      P      G     +P    PPV 
Sbjct: 1077 PAPSGAPPVPAPSGIPPVPK--PSVAAPPVPKPSVAVPPVPAPSGAPPVPKPSVAAPPVP 1134

Query: 527  PPPXKXXXPHXGXXXXXXPGPXXPPP 450
             P      P         P P   PP
Sbjct: 1135 VPSGAPPVPKPSVAAPPVPAPSGAPP 1160



 Score = 29.1 bits (62), Expect = 0.77
 Identities = 20/86 (23%), Positives = 21/86 (24%)
 Frame = -1

Query: 707  PAXXXXPPXXXXXXXXPXPXXXPPPXQXPPPXXXXRXPXXXXXXGXXXXXRPPXXXPPVX 528
            P     PP        P P   P      P       P      G     +P    PPV 
Sbjct: 1134 PVPSGAPPVPKPSVAAP-PVPAPSGAPPVPKPSVAAPPVPAPSSGIPPVPKPAAGVPPVP 1192

Query: 527  PPPXKXXXPHXGXXXXXXPGPXXPPP 450
            PP      P         P P   PP
Sbjct: 1193 PPSEAPPVPKPSVGVPPVPPPSTAPP 1218



 Score = 25.8 bits (54), Expect = 7.2
 Identities = 20/86 (23%), Positives = 21/86 (24%)
 Frame = -1

Query: 707  PAXXXXPPXXXXXXXXPXPXXXPPPXQXPPPXXXXRXPXXXXXXGXXXXXRPPXXXPPVX 528
            PA    PP        P P   P     P P      P            +P    PPV 
Sbjct: 1153 PAPSGAPPVPKPSVAAP-PVPAPSSGIPPVPKPAAGVPPVPPPSEAPPVPKPSVGVPPVP 1211

Query: 527  PPPXKXXXPHXGXXXXXXPGPXXPPP 450
            PP      P         P P    P
Sbjct: 1212 PPSTAPPVPTPSAGLPPVPVPTAKAP 1237


>SPAC4F10.15c |wsp1||WASp homolog|Schizosaccharomyces pombe|chr
           1|||Manual
          Length = 574

 Score = 26.6 bits (56), Expect = 4.1
 Identities = 18/77 (23%), Positives = 22/77 (28%)
 Frame = -2

Query: 658 PXXXXXPPPXNXPPPXXXPAXRXKXXXXGXXXXSXRPXXNXPXTPRPXXXXPPTXGXXAX 479
           P     PPP   PPP   P+   +            P    P  P       P  G  + 
Sbjct: 355 PQGRSAPPP---PPPRSAPSTGRQPPPLSSSRAVSNPPAPPPAIPGRSAPALPPLGNASR 411

Query: 478 TXXXPXXPPPGXXXAXP 428
           T   P   PP    + P
Sbjct: 412 TSTPPVPTPPSLPPSAP 428


>SPBC13E7.09 |vrp1||verprolin|Schizosaccharomyces pombe|chr
           2|||Manual
          Length = 309

 Score = 26.2 bits (55), Expect = 5.5
 Identities = 17/64 (26%), Positives = 17/64 (26%)
 Frame = -1

Query: 710 PPAXXXXPPXXXXXXXXPXPXXXPPPXQXPPPXXXXRXPXXXXXXGXXXXXRPPXXXPPV 531
           PP     PP        P P   PP     PP      P              P   P V
Sbjct: 144 PPRPSIPPPSPASAP--PIPSKAPPIPSSLPPPAQPAAPVKSPPSAPSLPSAVPPMPPKV 201

Query: 530 XPPP 519
            PPP
Sbjct: 202 PPPP 205


>SPBC146.07 |prp2|mis11|U2AF large subunit |Schizosaccharomyces
           pombe|chr 2|||Manual
          Length = 517

 Score = 25.8 bits (54), Expect = 7.2
 Identities = 9/27 (33%), Positives = 16/27 (59%)
 Frame = -3

Query: 321 LRSLISNLSNTCDLTPLPEWSCEQSAW 241
           +RS+   L    D+TP+ +W  ++S W
Sbjct: 109 VRSIEQELEQLRDVTPINQWKRKRSLW 135


  Database: spombe
    Posted date:  Oct 4, 2007 10:57 AM
  Number of letters in database: 2,362,478
  Number of sequences in database:  5004
  
Lambda     K      H
   0.318    0.134    0.401 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 1,412,108
Number of Sequences: 5004
Number of extensions: 17323
Number of successful extensions: 69
Number of sequences better than 10.0: 4
Number of HSP's better than 10.0 without gapping: 39
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 61
length of database: 2,362,478
effective HSP length: 72
effective length of database: 2,002,190
effective search space used: 390427050
frameshift window, decay const: 40,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)