Last updated: 2022/11/18
BLASTX 2.2.12 [Aug-07-2005]
Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer,
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997),
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs", Nucleic Acids Res. 25:3389-3402.
Query= BmNP11_T7_E17
(821 letters)
Database: spombe
5004 sequences; 2,362,478 total letters
Searching..................................................done
Score E
Sequences producing significant alignments: (bits) Value
SPAC458.05 |pik3|vps34|phosphatidylinositol 3-kinase Pik3|Schizo... 29 1.1
SPBPJ4664.02 |||glycoprotein |Schizosaccharomyces pombe|chr 2|||... 29 1.1
SPAC6G10.10c |||human hmmtag2 homolog|Schizosaccharomyces pombe|... 27 4.3
SPCC1442.02 ||SPCC1450.18|DUF1760 family protein|Schizosaccharom... 27 4.3
SPBP16F5.03c |||phosphatidylinositol kinase |Schizosaccharomyces... 26 5.6
SPAC4D7.01c |sec71|sec7a, SPAP8A3.15c|Sec7 domain|Schizosaccharo... 26 7.4
SPBC14C8.17c |||SAGA complex subunit Spt8 |Schizosaccharomyces p... 26 7.4
SPAC644.17c |mrpl9||mitochondrial ribosomal protein subunit L9|S... 25 9.8
SPBC409.07c |wis1|spc2, smf2|MAP kinase kinase Wis1|Schizosaccha... 25 9.8
SPAC22F3.06c |lon1||Lon protease homolog Lon1|Schizosaccharomyce... 25 9.8
SPBP19A11.02c |||sequence orphan|Schizosaccharomyces pombe|chr 2... 25 9.8
>SPAC458.05 |pik3|vps34|phosphatidylinositol 3-kinase
Pik3|Schizosaccharomyces pombe|chr 1|||Manual
Length = 801
Score = 28.7 bits (61), Expect = 1.1
Identities = 12/22 (54%), Positives = 15/22 (68%)
Frame = +3
Query: 507 NLHPPAEPEHRRIARHERTGRL 572
NL PAE +HRR+ R +R G L
Sbjct: 235 NLDSPAELKHRRLVRSQRNGPL 256
>SPBPJ4664.02 |||glycoprotein |Schizosaccharomyces pombe|chr
2|||Manual
Length = 3971
Score = 28.7 bits (61), Expect = 1.1
Identities = 15/61 (24%), Positives = 25/61 (40%), Gaps = 1/61 (1%)
Frame = +1
Query: 385 PATTQTTILRVPPLLHDVTPTLRKPTANTCQARTSTHFTGKTCIRQRNPNTXASP-DTNA 561
P T+ T + PP+ P ++ TST T T + P T ++ +T+
Sbjct: 1643 PITSSTALNTSPPITSSTVVNSSTPITSSTVVNTSTPITSSTVVNSSTPITSSTALNTST 1702
Query: 562 P 564
P
Sbjct: 1703 P 1703
Score = 25.4 bits (53), Expect = 9.8
Identities = 20/68 (29%), Positives = 26/68 (38%), Gaps = 9/68 (13%)
Frame = +1
Query: 370 PQQILPATTQTTILRVP-PLLHDVTPTLRKPT--------ANTCQARTSTHFTGKTCIRQ 522
P L ++ TTI P + + KPT ANT TST T T +
Sbjct: 321 PSVALSTSSTTTITNASTPAANTIISRSSKPTDTTNSISFANTTPENTSTQITSPTAVNS 380
Query: 523 RNPNTXAS 546
P T +S
Sbjct: 381 STPITSSS 388
>SPAC6G10.10c |||human hmmtag2 homolog|Schizosaccharomyces pombe|chr
1|||Manual
Length = 194
Score = 26.6 bits (56), Expect = 4.3
Identities = 17/64 (26%), Positives = 28/64 (43%)
Frame = +3
Query: 369 TATNLTSHHANYNFTGSTSLTRCYSHTEEANREHLSSTHKHALHRKNLHPPAEPEHRRIA 548
T T S ++ + S S + H + +E S H+H HR++ EP ++
Sbjct: 110 TNTEKDSRSIAHSTSRSRSTSPANRHRRK-EKERTRSNHRHGSHRRH-----EPYRTHLS 163
Query: 549 RHER 560
RH R
Sbjct: 164 RHHR 167
>SPCC1442.02 ||SPCC1450.18|DUF1760 family
protein|Schizosaccharomyces pombe|chr 3|||Manual
Length = 562
Score = 26.6 bits (56), Expect = 4.3
Identities = 9/26 (34%), Positives = 14/26 (53%)
Frame = +3
Query: 576 LQVTTTSDVSXFFPTETCLLSCLLAC 653
+ +++ D FP C L+CL AC
Sbjct: 170 ISISSIQDAMHRFPVSECYLACLKAC 195
>SPBP16F5.03c |||phosphatidylinositol kinase |Schizosaccharomyces
pombe|chr 2|||Manual
Length = 3699
Score = 26.2 bits (55), Expect = 5.6
Identities = 17/48 (35%), Positives = 24/48 (50%)
Frame = +2
Query: 353 TMQTSYRNKSYQPPRKLQFYGFHLSYTMLLPH*GSQPRTLVKHAQART 496
TM + ++K RKL+ HL + L+ H QP +HAQ RT
Sbjct: 1356 TMLKTSQSKDSSSLRKLRATCLHLLFASLVAHKFDQP----QHAQTRT 1399
>SPAC4D7.01c |sec71|sec7a, SPAP8A3.15c|Sec7
domain|Schizosaccharomyces pombe|chr 1|||Manual
Length = 1811
Score = 25.8 bits (54), Expect = 7.4
Identities = 16/49 (32%), Positives = 24/49 (48%)
Frame = +3
Query: 453 EANREHLSSTHKHALHRKNLHPPAEPEHRRIARHERTGRLILQVTTTSD 599
E N ++L + K +L PP + R E+TG L Q T+TS+
Sbjct: 60 EINDKNLEA-EKDIESNLSLRPPEDDLDSRSIESEQTGTLSKQTTSTSE 107
>SPBC14C8.17c |||SAGA complex subunit Spt8 |Schizosaccharomyces
pombe|chr 2|||Manual
Length = 526
Score = 25.8 bits (54), Expect = 7.4
Identities = 7/12 (58%), Positives = 10/12 (83%)
Frame = +3
Query: 648 ACWSPKSSNVYV 683
ACWSP +N+Y+
Sbjct: 403 ACWSPDGNNIYI 414
>SPAC644.17c |mrpl9||mitochondrial ribosomal protein subunit
L9|Schizosaccharomyces pombe|chr 1|||Manual
Length = 259
Score = 25.4 bits (53), Expect = 9.8
Identities = 9/15 (60%), Positives = 12/15 (80%)
Frame = +1
Query: 340 KTFYHHANFLPQQIL 384
+TF HHAN P++IL
Sbjct: 13 RTFAHHANLTPRKIL 27
>SPBC409.07c |wis1|spc2, smf2|MAP kinase kinase
Wis1|Schizosaccharomyces pombe|chr 2|||Manual
Length = 605
Score = 25.4 bits (53), Expect = 9.8
Identities = 13/40 (32%), Positives = 18/40 (45%)
Frame = +1
Query: 442 PTLRKPTANTCQARTSTHFTGKTCIRQRNPNTXASPDTNA 561
P L +PT+ Q R GK + NP + SP + A
Sbjct: 219 PLLNRPTSFNRQTRIRRAPPGKLDLSNSNPTSPVSPSSMA 258
>SPAC22F3.06c |lon1||Lon protease homolog Lon1|Schizosaccharomyces
pombe|chr 1|||Manual
Length = 1067
Score = 25.4 bits (53), Expect = 9.8
Identities = 15/57 (26%), Positives = 26/57 (45%)
Frame = -2
Query: 670 DDFGLQQASKQESKQVSVGKKXDTSEVVVTCKIRRPVRSCLAMRRCSGSAGGCRFFR 500
D +GL+ + + V+VGK T + + C + P ++ + SA FFR
Sbjct: 545 DHYGLKDVKDRVLELVAVGKLRGTMQGKIMCLVGPPGVGKTSVGKSIASALNREFFR 601
>SPBP19A11.02c |||sequence orphan|Schizosaccharomyces pombe|chr
2|||Manual
Length = 244
Score = 25.4 bits (53), Expect = 9.8
Identities = 16/41 (39%), Positives = 18/41 (43%), Gaps = 2/41 (4%)
Frame = +1
Query: 355 HANFLPQQILPATTQTTILRVPPLLHDVTPTLRKPT--ANT 471
H N + P T T VPP H T T+ PT ANT
Sbjct: 114 HVNSTTTVVPPTTHVNTTTVVPPTTHVNTTTVVPPTTHANT 154
Database: spombe
Posted date: Oct 4, 2007 10:57 AM
Number of letters in database: 2,362,478
Number of sequences in database: 5004
Lambda K H
0.318 0.134 0.401
Gapped
Lambda K H
0.279 0.0580 0.190
Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 2,986,767
Number of Sequences: 5004
Number of extensions: 59093
Number of successful extensions: 203
Number of sequences better than 10.0: 11
Number of HSP's better than 10.0 without gapping: 190
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 202
length of database: 2,362,478
effective HSP length: 72
effective length of database: 2,002,190
effective search space used: 402440190
frameshift window, decay const: 40, 0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)
- SilkBase 1999-2023 -