Bombyx BLAST Result against bee

BLASTX 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= BmNP11_T7_E17
         (821 letters)

Database: bee 
           438 sequences; 146,343 total letters

Searching......................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

AJ517411-1|CAD56944.1| 1770|Apis mellifera vitellogenin precurso...    24   2.0  
AJ276511-1|CAC06383.1|  352|Apis mellifera Antennapedia protein ...    24   2.0  
AB047034-1|BAB64310.1| 1598|Apis mellifera mblk-1 protein.             23   2.6  
AF084556-1|AAC71015.1|  652|Apis mellifera pipsqueak protein.          23   3.4  
DQ855487-1|ABH88174.1|  125|Apis mellifera chemosensory protein ...    22   7.9  
AY395073-1|AAQ96729.1|  203|Apis mellifera GABA neurotransmitter...    22   7.9  
AJ973402-1|CAJ01449.1|  125|Apis mellifera hypothetical protein ...    22   7.9  

>AJ517411-1|CAD56944.1| 1770|Apis mellifera vitellogenin precursor
            protein.
          Length = 1770

 Score = 23.8 bits (49), Expect = 2.0
 Identities = 12/43 (27%), Positives = 19/43 (44%)
 Frame = +3

Query: 498  HRKNLHPPAEPEHRRIARHERTGRLILQVTTTSDVSXFFPTET 626
            H + LH P +     ++R    G+  ++V   SD   F P  T
Sbjct: 1482 HNEKLHIPKDKSVSVLSRENEAGQKEVKVLLGSDKIKFVPGTT 1524


>AJ276511-1|CAC06383.1|  352|Apis mellifera Antennapedia protein
           protein.
          Length = 352

 Score = 23.8 bits (49), Expect = 2.0
 Identities = 8/39 (20%), Positives = 19/39 (48%)
 Frame = +3

Query: 444 HTEEANREHLSSTHKHALHRKNLHPPAEPEHRRIARHER 560
           H  +A ++HL +  +H ++++     A  +  +   H R
Sbjct: 186 HQSQAQQQHLQAHEQHMMYQQQQQSQAASQQSQPGMHPR 224


>AB047034-1|BAB64310.1| 1598|Apis mellifera mblk-1 protein.
          Length = 1598

 Score = 23.4 bits (48), Expect = 2.6
 Identities = 20/84 (23%), Positives = 33/84 (39%), Gaps = 2/84 (2%)
 Frame = +3

Query: 315 PPATCADSQDILPPCKLLTATNLTSHHANYNFTGSTSLTRCYSHTEEANREHLSSTHKH- 491
           PPA    S   LP     T T  T+  A    T +T+ T            HL + H H 
Sbjct: 96  PPA----SSTSLPATITTTTTTTTTTTATAAATATTTATGLIKQETLQRHHHLQNHHHHL 151

Query: 492 -ALHRKNLHPPAEPEHRRIARHER 560
            +   ++ H P + + ++  R ++
Sbjct: 152 QSTAVQDHHRPYQQQQQQQQRQQQ 175


>AF084556-1|AAC71015.1|  652|Apis mellifera pipsqueak protein.
          Length = 652

 Score = 23.0 bits (47), Expect = 3.4
 Identities = 16/73 (21%), Positives = 22/73 (30%)
 Frame = +3

Query: 315 PPATCADSQDILPPCKLLTATNLTSHHANYNFTGSTSLTRCYSHTEEANREHLSSTHKHA 494
           PP+    S    P    +  T L  HH  Y    +T   R          +   S   + 
Sbjct: 130 PPSVSLSSPPREPGTPRINFTKLKRHHPRYKRPRTTFEPRATDSRHYDRYKEEESNENYN 189

Query: 495 LHRKNLHPPAEPE 533
              K  H   +PE
Sbjct: 190 WEHKETHIDWQPE 202


>DQ855487-1|ABH88174.1|  125|Apis mellifera chemosensory protein 6
           protein.
          Length = 125

 Score = 21.8 bits (44), Expect = 7.9
 Identities = 9/29 (31%), Positives = 14/29 (48%)
 Frame = +2

Query: 572 YLTGHDDFRCVXFLPHGNLLAFLFACLLE 658
           Y T +DD      L +G +L     C+L+
Sbjct: 21  YTTKYDDMDIDRILQNGRILTNYIKCMLD 49


>AY395073-1|AAQ96729.1|  203|Apis mellifera GABA neurotransmitter
           transporter-1A protein.
          Length = 203

 Score = 21.8 bits (44), Expect = 7.9
 Identities = 6/13 (46%), Positives = 10/13 (76%)
 Frame = +1

Query: 4   FFFFLRLHSDLEW 42
           F+FF+ + S+L W
Sbjct: 86  FYFFMSMRSELPW 98


>AJ973402-1|CAJ01449.1|  125|Apis mellifera hypothetical protein
           protein.
          Length = 125

 Score = 21.8 bits (44), Expect = 7.9
 Identities = 9/29 (31%), Positives = 14/29 (48%)
 Frame = +2

Query: 572 YLTGHDDFRCVXFLPHGNLLAFLFACLLE 658
           Y T +DD      L +G +L     C+L+
Sbjct: 21  YTTKYDDMDIDRILQNGRILTNYIKCMLD 49


  Database: bee
    Posted date:  Oct 23, 2007  1:17 PM
  Number of letters in database: 146,343
  Number of sequences in database:  438
  
Lambda     K      H
   0.318    0.134    0.401 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 208,446
Number of Sequences: 438
Number of extensions: 4498
Number of successful extensions: 12
Number of sequences better than 10.0: 7
Number of HSP's better than 10.0 without gapping: 12
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 12
length of database: 146,343
effective HSP length: 57
effective length of database: 121,377
effective search space used: 26217432
frameshift window, decay const: 40,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)