Bombyx BLAST Result against spombe

BLASTX 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= BmNP11_T7_E16
         (1076 letters)

Database: spombe 
           5004 sequences; 2,362,478 total letters

Searching..................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

SPCC895.05 |for3||formin For3|Schizosaccharomyces pombe|chr 3|||...    34   0.030
SPAC4F8.12c |spp42|cwf6|U5 snRNP complex subunit Spp42|Schizosac...    27   0.31 
SPCC306.09c |cap1|cap|adenylyl cyclase-associated protein Cap1|S...    25   0.58 
SPAC19G12.10c |cpy1|pcy1|vacuolar carboxypeptidase Y|Schizosacch...    29   1.5  
SPAC4F10.15c |wsp1||WASp homolog|Schizosaccharomyces pombe|chr 1...    28   2.0  
SPAC1F5.04c |cdc12||formin Cdc12|Schizosaccharomyces pombe|chr 1...    25   3.2  
SPBC146.13c |myo1||myosin type I|Schizosaccharomyces pombe|chr 2...    24   5.5  
SPBC13E7.03c |||RNA hairpin binding protein |Schizosaccharomyces...    24   5.8  
SPBC557.04 |ppk29||Ark1/Prk1 family protein kinase Ppk29|Schizos...    23   7.3  

>SPCC895.05 |for3||formin For3|Schizosaccharomyces pombe|chr
           3|||Manual
          Length = 1461

 Score = 34.3 bits (75), Expect = 0.030
 Identities = 14/33 (42%), Positives = 15/33 (45%)
 Frame = +2

Query: 335 PPPXKFFXKXXPPPXDXGVFFXXPXKXPPPPPS 433
           PPP        PPP   GV    P   PPPPP+
Sbjct: 752 PPPAPIMGGPPPPPPPPGVAGAGPPPPPPPPPA 784



 Score = 31.9 bits (69), Expect = 0.16
 Identities = 19/59 (32%), Positives = 19/59 (32%), Gaps = 7/59 (11%)
 Frame = +3

Query: 513 PPPPPPXXFF-------FXXKNXXXXXXGGGRXPPXXXXIGXXRXPPPPPPPXXXGGXS 668
           PPPPPP                      G    PP     G    PPPPPPP    G S
Sbjct: 732 PPPPPPAVIVPTPAPAPIPVPPPAPIMGGPPPPPPPPGVAGAGPPPPPPPPPAVSAGGS 790



 Score = 27.5 bits (58), Expect = 3.4
 Identities = 20/69 (28%), Positives = 22/69 (31%)
 Frame = +1

Query: 325 KXXPPPPXIFLXXXPPPXRRXCFFXXPXXXXPXPPLXXGXAPXXXXXXGXGGXXXXXXGX 504
           K  PPPP   +   P P         P    P  P+  G  P                G 
Sbjct: 730 KSPPPPPPAVIVPTPAPA--------PIPVPPPAPIMGGPPPPPPPPG--------VAGA 773

Query: 505 GXXPPPPPP 531
           G  PPPPPP
Sbjct: 774 GPPPPPPPP 782


>SPAC4F8.12c |spp42|cwf6|U5 snRNP complex subunit
           Spp42|Schizosaccharomyces pombe|chr 1|||Manual
          Length = 2363

 Score = 26.6 bits (56), Expect(2) = 0.31
 Identities = 11/21 (52%), Positives = 12/21 (57%)
 Frame = +2

Query: 368 PPPXDXGVFFXXPXKXPPPPP 430
           PPP   G  F  P + PPPPP
Sbjct: 11  PPPPPPG--FEPPSQPPPPPP 29



 Score = 24.2 bits (50), Expect(2) = 0.86
 Identities = 8/12 (66%), Positives = 8/12 (66%)
 Frame = +3

Query: 504 GXXPPPPPPXXF 539
           G  PPPPPP  F
Sbjct: 7   GNPPPPPPPPGF 18



 Score = 23.4 bits (48), Expect(2) = 0.86
 Identities = 8/15 (53%), Positives = 9/15 (60%)
 Frame = +3

Query: 513 PPPPPPXXFFFXXKN 557
           PPPPPP  +    KN
Sbjct: 24  PPPPPPPGYVKKRKN 38



 Score = 22.6 bits (46), Expect(2) = 0.31
 Identities = 8/22 (36%), Positives = 10/22 (45%)
 Frame = +2

Query: 515 PPPPPPXFFFXXKKXXXXGXGG 580
           PPPPPP  +   +K       G
Sbjct: 24  PPPPPPPGYVKKRKNKTPAQSG 45


>SPCC306.09c |cap1|cap|adenylyl cyclase-associated protein
           Cap1|Schizosaccharomyces pombe|chr 3|||Manual
          Length = 551

 Score = 25.0 bits (52), Expect(2) = 0.58
 Identities = 8/10 (80%), Positives = 8/10 (80%)
 Frame = +3

Query: 501 GGXXPPPPPP 530
           GG  PPPPPP
Sbjct: 303 GGLPPPPPPP 312



 Score = 23.4 bits (48), Expect(2) = 0.58
 Identities = 8/15 (53%), Positives = 9/15 (60%)
 Frame = +3

Query: 513 PPPPPPXXFFFXXKN 557
           PPPPPP   F+   N
Sbjct: 309 PPPPPPSNDFWKDSN 323


>SPAC19G12.10c |cpy1|pcy1|vacuolar carboxypeptidase
           Y|Schizosaccharomyces pombe|chr 1|||Manual
          Length = 1002

 Score = 28.7 bits (61), Expect = 1.5
 Identities = 18/59 (30%), Positives = 21/59 (35%), Gaps = 1/59 (1%)
 Frame = +2

Query: 257 PPPXXXXXGVXFXPPRXGXGXGKKXXPPPXKFF-XKXXPPPXDXGVFFXXPXKXPPPPP 430
           PPP     G    PP      G+   PPP      +  PPP         P +  PPPP
Sbjct: 209 PPPMHHKPGEHMPPPPMHHEPGEHMPPPPMHHEPGEHMPPPP----MHHEPGEHMPPPP 263



 Score = 28.7 bits (61), Expect = 1.5
 Identities = 18/59 (30%), Positives = 21/59 (35%), Gaps = 1/59 (1%)
 Frame = +2

Query: 257 PPPXXXXXGVXFXPPRXGXGXGKKXXPPPXKFF-XKXXPPPXDXGVFFXXPXKXPPPPP 430
           PPP     G    PP      G+   PPP      +  PPP         P +  PPPP
Sbjct: 235 PPPMHHEPGEHMPPPPMHHEPGEHMPPPPMHHEPGEHMPPPP----MHHEPGEHMPPPP 289



 Score = 28.7 bits (61), Expect = 1.5
 Identities = 18/59 (30%), Positives = 21/59 (35%), Gaps = 1/59 (1%)
 Frame = +2

Query: 257 PPPXXXXXGVXFXPPRXGXGXGKKXXPPPXKFF-XKXXPPPXDXGVFFXXPXKXPPPPP 430
           PPP     G    PP      G+   PPP      +  PPP         P +  PPPP
Sbjct: 261 PPPMHHEPGEHMPPPPMHHEPGEHMPPPPMHHEPGEHMPPPP----MHHEPGEHMPPPP 315



 Score = 28.7 bits (61), Expect = 1.5
 Identities = 18/59 (30%), Positives = 21/59 (35%), Gaps = 1/59 (1%)
 Frame = +2

Query: 257 PPPXXXXXGVXFXPPRXGXGXGKKXXPPPXKFF-XKXXPPPXDXGVFFXXPXKXPPPPP 430
           PPP     G    PP      G+   PPP      +  PPP         P +  PPPP
Sbjct: 287 PPPMHHEPGEHMPPPPMHHEPGEHMPPPPMHHEPGEHMPPPP----MHHEPGEHMPPPP 341


>SPAC4F10.15c |wsp1||WASp homolog|Schizosaccharomyces pombe|chr
           1|||Manual
          Length = 574

 Score = 28.3 bits (60), Expect = 2.0
 Identities = 14/44 (31%), Positives = 16/44 (36%)
 Frame = +2

Query: 515 PPPPPPXFFFXXKKXXXXGXGGXAXPPXXXXDRXXEGXAPPPPP 646
           PPPPPP      K     G    + PP     R     + P PP
Sbjct: 312 PPPPPPSRRNRGKPPIGNGSSNSSLPPPPPPPRSNAAGSIPLPP 355


>SPAC1F5.04c |cdc12||formin Cdc12|Schizosaccharomyces pombe|chr
           1|||Manual
          Length = 1841

 Score = 24.6 bits (51), Expect(2) = 3.2
 Identities = 8/15 (53%), Positives = 8/15 (53%)
 Frame = +3

Query: 627 PPPPPPPXXXGGXSG 671
           PPPPPPP       G
Sbjct: 946 PPPPPPPPLVSAAGG 960



 Score = 21.0 bits (42), Expect(2) = 3.2
 Identities = 6/6 (100%), Positives = 6/6 (100%)
 Frame = +3

Query: 513 PPPPPP 530
           PPPPPP
Sbjct: 945 PPPPPP 950


>SPBC146.13c |myo1||myosin type I|Schizosaccharomyces pombe|chr
            2|||Manual
          Length = 1217

 Score = 23.8 bits (49), Expect(2) = 5.5
 Identities = 7/7 (100%), Positives = 7/7 (100%)
 Frame = +3

Query: 627  PPPPPPP 647
            PPPPPPP
Sbjct: 1096 PPPPPPP 1102



 Score = 21.0 bits (42), Expect(2) = 5.5
 Identities = 6/6 (100%), Positives = 6/6 (100%)
 Frame = +3

Query: 513  PPPPPP 530
            PPPPPP
Sbjct: 1095 PPPPPP 1100


>SPBC13E7.03c |||RNA hairpin binding protein |Schizosaccharomyces
           pombe|chr 2|||Manual
          Length = 713

 Score = 23.8 bits (49), Expect(2) = 5.8
 Identities = 7/7 (100%), Positives = 7/7 (100%)
 Frame = +3

Query: 627 PPPPPPP 647
           PPPPPPP
Sbjct: 371 PPPPPPP 377



 Score = 21.0 bits (42), Expect(2) = 5.8
 Identities = 6/6 (100%), Positives = 6/6 (100%)
 Frame = +3

Query: 513 PPPPPP 530
           PPPPPP
Sbjct: 370 PPPPPP 375


>SPBC557.04 |ppk29||Ark1/Prk1 family protein kinase
           Ppk29|Schizosaccharomyces pombe|chr 2|||Manual
          Length = 872

 Score = 22.6 bits (46), Expect(2) = 7.3
 Identities = 7/9 (77%), Positives = 7/9 (77%)
 Frame = +3

Query: 504 GXXPPPPPP 530
           G  PPPPPP
Sbjct: 353 GSRPPPPPP 361



 Score = 21.8 bits (44), Expect(2) = 7.3
 Identities = 7/9 (77%), Positives = 7/9 (77%)
 Frame = +3

Query: 621 RXPPPPPPP 647
           R PPPPP P
Sbjct: 355 RPPPPPPMP 363


  Database: spombe
    Posted date:  Oct 4, 2007 10:57 AM
  Number of letters in database: 2,362,478
  Number of sequences in database:  5004
  
Lambda     K      H
   0.318    0.134    0.401 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 2,297,063
Number of Sequences: 5004
Number of extensions: 39666
Number of successful extensions: 284
Number of sequences better than 10.0: 9
Number of HSP's better than 10.0 without gapping: 36
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 141
length of database: 2,362,478
effective HSP length: 74
effective length of database: 1,992,182
effective search space used: 565779688
frameshift window, decay const: 40,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)