Bombyx BLAST Result against spombe

BLASTX 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= BmNP11_T7_E09
         (784 letters)

Database: spombe 
           5004 sequences; 2,362,478 total letters

Searching..................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

SPAPB8E5.06c |rpl302|rpl3-2, rpl3-b|60S ribosomal protein L3|Sch...   228   8e-61
SPAC17A5.03 |rpl301|rpl3-1, rpl3|60S ribosomal protein L3 |Schiz...   228   8e-61
SPBC685.09 |orc2|orp2|origin recognition complex subunit Orc2|Sc...    29   0.57 
SPBPJ4664.01 |dps1|SPBPJ694.01|decaprenyl diphosphate synthase s...    28   1.7  
SPAC17A2.10c |||sequence orphan|Schizosaccharomyces pombe|chr 1|...    27   2.3  
SPBC21.02 |||TLDc domain protein 2|Schizosaccharomyces pombe|chr...    27   4.0  
SPAC16A10.01 |||DUF1212 family protein|Schizosaccharomyces pombe...    26   7.0  
SPCC1281.06c |||acyl-coA desaturase |Schizosaccharomyces pombe|c...    25   9.3  
SPAC31G5.14 |gcv1|n313|glycine decarboxylase T subunit|Schizosac...    25   9.3  
SPAC22F8.07c |rtf1||replication termination factor Rtf1|Schizosa...    25   9.3  

>SPAPB8E5.06c |rpl302|rpl3-2, rpl3-b|60S ribosomal protein
           L3|Schizosaccharomyces pombe|chr 1|||Manual
          Length = 388

 Score =  228 bits (557), Expect = 8e-61
 Identities = 113/192 (58%), Positives = 138/192 (71%)
 Frame = -3

Query: 683 IPVDSVFAQDEMIDCIGVTQGAKDTKVSLLVGTQRSYPVRHTKGLRKVACIGAWHPSRVS 504
           + + S F Q+EMID IGVT+G  +   +   GT+R  P +  +GLRKVACIGAWHP+ V 
Sbjct: 203 VDIKSTFEQNEMIDVIGVTRGKGNEGTTARWGTKR-LPRKTHRGLRKVACIGAWHPANVQ 261

Query: 503 FTVARAGQKGYHHRTEMXKKIYRIGQGIHKKDGKVIKNNASTEYDLSEKSITPMGGFPHY 324
           +TVARAG  GY HRT++  KIYRIG G    D K    NAST++D +EK ITPMGGF  Y
Sbjct: 262 WTVARAGNAGYMHRTQLNSKIYRIGAG---DDAK----NASTDFDATEKRITPMGGFVRY 314

Query: 323 GEVNNDFVMIKGCCMGPKKRIITLRKSLRVHTKRAALEKINLKFIDTSSKFGHGRFQTPA 144
           G V NDFVM+ G   GP KR++TLRKSL  HT R ALE ++LK+IDT+SKFGHGRFQTPA
Sbjct: 315 GVVENDFVMLNGATPGPVKRVLTLRKSLLTHTSRKALEPVSLKWIDTASKFGHGRFQTPA 374

Query: 143 DKAAFMGTLKKD 108
           +   F+GTLKKD
Sbjct: 375 EAKQFLGTLKKD 386



 Score = 50.0 bits (114), Expect = 4e-07
 Identities = 19/28 (67%), Positives = 24/28 (85%)
 Frame = -1

Query: 772 QKRVHIMEIQXNGGTIEDKVKWAREHXE 689
           QK+ H+MEIQ NGG++ DKV+WAREH E
Sbjct: 173 QKKAHLMEIQVNGGSVADKVEWAREHFE 200


>SPAC17A5.03 |rpl301|rpl3-1, rpl3|60S ribosomal protein L3
           |Schizosaccharomyces pombe|chr 1|||Manual
          Length = 388

 Score =  228 bits (557), Expect = 8e-61
 Identities = 113/192 (58%), Positives = 138/192 (71%)
 Frame = -3

Query: 683 IPVDSVFAQDEMIDCIGVTQGAKDTKVSLLVGTQRSYPVRHTKGLRKVACIGAWHPSRVS 504
           + + S F Q+EMID IGVT+G  +   +   GT+R  P +  +GLRKVACIGAWHP+ V 
Sbjct: 203 VDIKSTFEQNEMIDVIGVTRGKGNEGTTARWGTKR-LPRKTHRGLRKVACIGAWHPANVQ 261

Query: 503 FTVARAGQKGYHHRTEMXKKIYRIGQGIHKKDGKVIKNNASTEYDLSEKSITPMGGFPHY 324
           +TVARAG  GY HRT++  KIYRIG G    D K    NAST++D +EK ITPMGGF  Y
Sbjct: 262 WTVARAGNAGYMHRTQLNSKIYRIGAG---DDAK----NASTDFDATEKRITPMGGFVRY 314

Query: 323 GEVNNDFVMIKGCCMGPKKRIITLRKSLRVHTKRAALEKINLKFIDTSSKFGHGRFQTPA 144
           G V NDFVM+ G   GP KR++TLRKSL  HT R ALE ++LK+IDT+SKFGHGRFQTPA
Sbjct: 315 GVVENDFVMLNGATPGPVKRVLTLRKSLLTHTSRKALEPVSLKWIDTASKFGHGRFQTPA 374

Query: 143 DKAAFMGTLKKD 108
           +   F+GTLKKD
Sbjct: 375 EAKQFLGTLKKD 386



 Score = 50.0 bits (114), Expect = 4e-07
 Identities = 19/28 (67%), Positives = 24/28 (85%)
 Frame = -1

Query: 772 QKRVHIMEIQXNGGTIEDKVKWAREHXE 689
           QK+ H+MEIQ NGG++ DKV+WAREH E
Sbjct: 173 QKKAHLMEIQVNGGSVADKVEWAREHFE 200


>SPBC685.09 |orc2|orp2|origin recognition complex subunit
           Orc2|Schizosaccharomyces pombe|chr 2|||Manual
          Length = 535

 Score = 29.5 bits (63), Expect = 0.57
 Identities = 18/67 (26%), Positives = 35/67 (52%)
 Frame = +3

Query: 399 NFAILFVDSLSNTIDFLVHFSTVMITFLTSTSYSERHPRRMPSSNAGNFPKTLGVSYGVA 578
           NFA+L+  SL ++ +F++H +T    +   T+Y   +   +  +N  N  K   + + + 
Sbjct: 377 NFALLWDTSLESSFNFVMHDATTFARYYNETTY--ENSLGIGRANVSN--KEKAIKHVLY 432

Query: 579 SLCANEK 599
           SL AN +
Sbjct: 433 SLPANSR 439


>SPBPJ4664.01 |dps1|SPBPJ694.01|decaprenyl diphosphate synthase
           subunit Dps1 |Schizosaccharomyces pombe|chr 2|||Manual
          Length = 378

 Score = 27.9 bits (59), Expect = 1.7
 Identities = 10/23 (43%), Positives = 15/23 (65%)
 Frame = -1

Query: 727 IEDKVKWAREHXENLSLSILCLP 659
           IE  + WA+E+ +    S+LCLP
Sbjct: 336 IEQTITWAKEYIKKAKDSLLCLP 358


>SPAC17A2.10c |||sequence orphan|Schizosaccharomyces pombe|chr
           1|||Manual
          Length = 230

 Score = 27.5 bits (58), Expect = 2.3
 Identities = 13/41 (31%), Positives = 22/41 (53%)
 Frame = +3

Query: 366 QIILSRCIVFNNFAILFVDSLSNTIDFLVHFSTVMITFLTS 488
           ++ L RC++   F +LF  S S +  FL   S + I + +S
Sbjct: 109 ELSLFRCLLLFFFFLLFFLSFSFSFSFLFFLSQIFIVYFSS 149


>SPBC21.02 |||TLDc domain protein 2|Schizosaccharomyces pombe|chr
           2|||Manual
          Length = 511

 Score = 26.6 bits (56), Expect = 4.0
 Identities = 10/20 (50%), Positives = 13/20 (65%)
 Frame = -2

Query: 129 HGYTQEGSYSRRSCGYHNPS 70
           HGY+   +  R+ C YHNPS
Sbjct: 307 HGYSMY-ALERKMCNYHNPS 325


>SPAC16A10.01 |||DUF1212 family protein|Schizosaccharomyces
           pombe|chr 1|||Manual
          Length = 830

 Score = 25.8 bits (54), Expect = 7.0
 Identities = 13/44 (29%), Positives = 22/44 (50%), Gaps = 1/44 (2%)
 Frame = +3

Query: 351 NGFLRQIILSRCIVFNNFAI-LFVDSLSNTIDFLVHFSTVMITF 479
           N FL  +  SRC V  N+ I + V S    ++F++     M+ +
Sbjct: 366 NSFLHNMGYSRCYVDENYHITIHVSSYERRVEFMLAVCEAMMLY 409


>SPCC1281.06c |||acyl-coA desaturase |Schizosaccharomyces pombe|chr
           3|||Manual
          Length = 479

 Score = 25.4 bits (53), Expect = 9.3
 Identities = 14/28 (50%), Positives = 15/28 (53%), Gaps = 1/28 (3%)
 Frame = +3

Query: 576 ASLCANEK*HLCILCPLGDTN-AVNHFI 656
           A+ C N   HL    P  DTN A NHFI
Sbjct: 246 ATFCVNSLAHLIGSQPFDDTNSARNHFI 273


>SPAC31G5.14 |gcv1|n313|glycine decarboxylase T
           subunit|Schizosaccharomyces pombe|chr 1|||Manual
          Length = 387

 Score = 25.4 bits (53), Expect = 9.3
 Identities = 10/20 (50%), Positives = 11/20 (55%)
 Frame = -1

Query: 754 MEIQXNGGTIEDKVKWAREH 695
           M +Q  G TI    KW REH
Sbjct: 46  MPVQYKGQTISASHKWTREH 65


>SPAC22F8.07c |rtf1||replication termination factor
           Rtf1|Schizosaccharomyces pombe|chr 1|||Manual
          Length = 466

 Score = 25.4 bits (53), Expect = 9.3
 Identities = 14/42 (33%), Positives = 19/42 (45%)
 Frame = +3

Query: 411 LFVDSLSNTIDFLVHFSTVMITFLTSTSYSERHPRRMPSSNA 536
           LF+D LS   D L+H   ++ +    T  S  H      SNA
Sbjct: 421 LFIDGLSTFSDTLIHLHKMLNSSPEETYISNLHDSYTAFSNA 462


  Database: spombe
    Posted date:  Oct 4, 2007 10:57 AM
  Number of letters in database: 2,362,478
  Number of sequences in database:  5004
  
Lambda     K      H
   0.318    0.134    0.401 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 3,390,079
Number of Sequences: 5004
Number of extensions: 73031
Number of successful extensions: 195
Number of sequences better than 10.0: 10
Number of HSP's better than 10.0 without gapping: 181
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 189
length of database: 2,362,478
effective HSP length: 71
effective length of database: 2,007,194
effective search space used: 379359666
frameshift window, decay const: 40,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)