Last updated: 2022/11/18
BLASTX 2.2.12 [Aug-07-2005]
Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer,
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997),
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs", Nucleic Acids Res. 25:3389-3402.
Query= BmNP11_T7_E09
(784 letters)
Database: rice
37,544 sequences; 14,793,348 total letters
Searching..................................................done
Score E
Sequences producing significant alignments: (bits) Value
11_01_0427 + 3274817-3274901,3275587-3275697,3275979-3276283,327... 246 2e-65
12_01_0435 + 3428552-3428636,3429242-3429352,3429434-3429738,342... 239 2e-63
07_01_0761 + 5849466-5850677 31 1.0
03_05_1096 - 30364144-30365310,30365825-30365971,30366087-303663... 29 3.2
04_03_0845 - 20245836-20246046,20246137-20246219,20246330-202464... 29 4.2
04_04_1321 + 32634471-32634566,32635102-32635193,32635290-326355... 28 9.6
>11_01_0427 +
3274817-3274901,3275587-3275697,3275979-3276283,
3276406-3276815,3276942-3277200
Length = 389
Score = 246 bits (602), Expect = 2e-65
Identities = 122/200 (61%), Positives = 146/200 (73%)
Frame = -3
Query: 713 EMGQRTXGEPIPVDSVFAQDEMIDCIGVTQGAKDTKVSLLVGTQRSYPVRHTKGLRKVAC 534
+ G + + IPVD+VF +DEMID IGVT+G V G R P + +GLRKVAC
Sbjct: 196 DYGYKFFEKEIPVDAVFQKDEMIDIIGVTKGKGYEGVVTRWGVTR-LPRKTHRGLRKVAC 254
Query: 533 IGAWHPSRVSFTVARAGQKGYHHRTEMXKKIYRIGQGIHKKDGKVIKNNASTEYDLSEKS 354
IGAWHP+RVS+TVARAGQ GYHHRTEM KK+Y+IG K G+ + A TE+D +EK
Sbjct: 255 IGAWHPARVSYTVARAGQNGYHHRTEMNKKVYKIG-----KSGQE-SHAACTEFDRTEKD 308
Query: 353 ITPMGGFPHYGEVNNDFVMIKGCCMGPKKRIITLRKSLRVHTKRAALEKINLKFIDTSSK 174
ITPMGGFPHYG V D++MIKGCC+GPKKR++TLR+SL T R ALE+I LKFIDTSSK
Sbjct: 309 ITPMGGFPHYGVVKGDYLMIKGCCVGPKKRVVTLRQSLLKQTSRLALEEIKLKFIDTSSK 368
Query: 173 FGHGRFQTPADKAAFMGTLK 114
FGHGRFQT +K F G LK
Sbjct: 369 FGHGRFQTTDEKQRFFGKLK 388
Score = 38.7 bits (86), Expect = 0.005
Identities = 16/29 (55%), Positives = 21/29 (72%)
Frame = -1
Query: 775 RQKRVHIMEIQXNGGTIEDKVKWAREHXE 689
+QK+ H+MEIQ NGGTI DKV + + E
Sbjct: 175 KQKKAHLMEIQINGGTIADKVDYGYKFFE 203
>12_01_0435 +
3428552-3428636,3429242-3429352,3429434-3429738,
3429821-3430230,3430323-3430556,3430934-3431378,
3432300-3432390,3433292-3433518,3433786-3433861,
3434009-3434134,3434221-3434384
Length = 757
Score = 239 bits (584), Expect = 2e-63
Identities = 118/192 (61%), Positives = 142/192 (73%)
Frame = -3
Query: 713 EMGQRTXGEPIPVDSVFAQDEMIDCIGVTQGAKDTKVSLLVGTQRSYPVRHTKGLRKVAC 534
+ G + + IPVD+VF +DEMID IGVT+G V G R P + +GLRKVAC
Sbjct: 196 DYGYKFFEKEIPVDAVFQKDEMIDIIGVTKGKGYEGVVTRWGVTR-LPRKTHRGLRKVAC 254
Query: 533 IGAWHPSRVSFTVARAGQKGYHHRTEMXKKIYRIGQGIHKKDGKVIKNNASTEYDLSEKS 354
IGAWHP+RVS+TVARAGQ GYHHRTEM KK+Y+IG K G+ + A TE+D +EK
Sbjct: 255 IGAWHPARVSYTVARAGQNGYHHRTEMNKKVYKIG-----KSGQE-SHAACTEFDRTEKD 308
Query: 353 ITPMGGFPHYGEVNNDFVMIKGCCMGPKKRIITLRKSLRVHTKRAALEKINLKFIDTSSK 174
ITPMGGFPHYG V D++MIKGCC+GPKKR++TLR+SL T R ALE+I LKFIDTSSK
Sbjct: 309 ITPMGGFPHYGVVKGDYLMIKGCCVGPKKRVVTLRQSLLKQTSRLALEEIKLKFIDTSSK 368
Query: 173 FGHGRFQTPADK 138
FGHGRFQT +K
Sbjct: 369 FGHGRFQTTDEK 380
Score = 38.7 bits (86), Expect = 0.005
Identities = 16/29 (55%), Positives = 21/29 (72%)
Frame = -1
Query: 775 RQKRVHIMEIQXNGGTIEDKVKWAREHXE 689
+QK+ H+MEIQ NGGTI DKV + + E
Sbjct: 175 KQKKAHLMEIQINGGTIADKVDYGYKFFE 203
>07_01_0761 + 5849466-5850677
Length = 403
Score = 31.1 bits (67), Expect = 1.0
Identities = 22/65 (33%), Positives = 28/65 (43%), Gaps = 2/65 (3%)
Frame = -3
Query: 605 VSLLVGTQRSYPVRHTKGLRKVACI--GAWHPSRVSFTVARAGQKGYHHRTEMXKKIYRI 432
V+LLVG R V V+ + G HP SFT+ RA H K+ RI
Sbjct: 129 VALLVGNDRRLRVLDAAASAAVSLVPDGEHHPINCSFTLGRAASSSGEH------KVLRI 182
Query: 431 GQGIH 417
G +H
Sbjct: 183 GTVVH 187
>03_05_1096 - 30364144-30365310,30365825-30365971,30366087-30366393,
30366541-30366849,30367544-30370567,30370640-30372290,
30372373-30373463,30373544-30373646,30373737-30374439,
30374654-30375783,30375913-30376027,30376504-30376695,
30377443-30377616,30378438-30378494,30378581-30378716,
30378842-30378927,30379023-30379092,30379993-30380021,
30380444-30380456,30380762-30381006
Length = 3582
Score = 29.5 bits (63), Expect = 3.2
Identities = 10/32 (31%), Positives = 18/32 (56%)
Frame = -3
Query: 371 DLSEKSITPMGGFPHYGEVNNDFVMIKGCCMG 276
D + + +P+GG P YG ++ D + C +G
Sbjct: 1371 DPTSAAASPIGGIPRYGRLSGDVYVCNQCTIG 1402
>04_03_0845 -
20245836-20246046,20246137-20246219,20246330-20246470,
20246561-20247421
Length = 431
Score = 29.1 bits (62), Expect = 4.2
Identities = 19/51 (37%), Positives = 23/51 (45%)
Frame = +3
Query: 573 VASLCANEK*HLCILCPLGDTNAVNHFILGKHRIDRDRFSXCSLAHFTLSS 725
VA LCA E HL + PL + LG+ R+ S L TLSS
Sbjct: 132 VALLCAPEWCHLALADPLLGCATLESLALGECRVSDRGASAARLTELTLSS 182
>04_04_1321 +
32634471-32634566,32635102-32635193,32635290-32635585,
32635665-32635863,32636019-32636223,32637001-32637093
Length = 326
Score = 27.9 bits (59), Expect = 9.6
Identities = 19/60 (31%), Positives = 32/60 (53%)
Frame = -1
Query: 706 AREHXENLSLSILCLPKMK*LTALVSPKGQRIQRCHFSLAHKEATP*DTPRVLGKLPALE 527
A+ + EN ++ +L PK K T S K R+Q+CH S A + +T ++ G + + E
Sbjct: 38 AKFNIENRTIYVLVCPKPKCGTNPQSWKVLRVQKCHTS-AQTDGKVDETDQINGNVCSSE 96
Database: rice
Posted date: Oct 4, 2007 10:57 AM
Number of letters in database: 14,793,348
Number of sequences in database: 37,544
Lambda K H
0.318 0.134 0.401
Gapped
Lambda K H
0.279 0.0580 0.190
Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 22,704,627
Number of Sequences: 37544
Number of extensions: 502521
Number of successful extensions: 1236
Number of sequences better than 10.0: 6
Number of HSP's better than 10.0 without gapping: 1186
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 1230
length of database: 14,793,348
effective HSP length: 81
effective length of database: 11,752,284
effective search space used: 2103658836
frameshift window, decay const: 40, 0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)
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