Last updated: 2022/11/18
BLASTX 2.2.12 [Aug-07-2005]
Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer,
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997),
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs", Nucleic Acids Res. 25:3389-3402.
Query= BmNP11_T7_E04
(817 letters)
Database: rice
37,544 sequences; 14,793,348 total letters
Searching..................................................done
Score E
Sequences producing significant alignments: (bits) Value
01_01_0448 - 3332238-3332330,3332414-3332481,3332570-3332618,333... 30 2.5
06_03_0743 + 24069752-24070483,24071890-24072345 29 3.3
12_01_0302 - 2286171-2286341,2286747-2286968 29 4.4
05_01_0028 + 182528-183852,183967-184127,184872-185116,185330-18... 29 4.4
09_04_0737 - 19822822-19822973,19823069-19823135,19823666-198238... 29 5.8
02_05_0640 - 30558523-30559027,30559123-30559252,30559388-305598... 29 5.8
03_05_0728 - 27174157-27174408,27175316-27175364,27175454-271755... 28 7.7
01_05_0014 - 17162664-17163500 28 7.7
>01_01_0448 -
3332238-3332330,3332414-3332481,3332570-3332618,
3332716-3332798,3332900-3333023,3333389-3333486,
3333555-3333634,3333712-3333782,3333872-3333953,
3334158-3334237,3334365-3334416,3334843-3334958
Length = 331
Score = 29.9 bits (64), Expect = 2.5
Identities = 19/54 (35%), Positives = 28/54 (51%)
Frame = -3
Query: 695 SXTSTRSSNPRFXTPTTPRLNIHFHQSPDAVLEGVRAGVKASVVIRGSISVSHP 534
S T+TR S PR PTTP ++ +S + L RA +V+ G+ + HP
Sbjct: 4 SSTATRLSPPRLHAPTTPSPHLPLRRSRFSPL---RAAKLEAVLTIGTHLIPHP 54
>06_03_0743 + 24069752-24070483,24071890-24072345
Length = 395
Score = 29.5 bits (63), Expect = 3.3
Identities = 19/56 (33%), Positives = 22/56 (39%)
Frame = -1
Query: 694 RXHQPDHQIPDSXHQPPPDLTSISINPLTPY*KEFAPGLKPPLSSEAPSAYLTPSS 527
R H P H P PPP S S + Y P PP+ P LTPS+
Sbjct: 17 RSHHPLHFPPPPPPPPPPYAASFS-GLYSSYLHPPPPPSSPPIREALPLLSLTPST 71
>12_01_0302 - 2286171-2286341,2286747-2286968
Length = 130
Score = 29.1 bits (62), Expect = 4.4
Identities = 13/34 (38%), Positives = 21/34 (61%)
Frame = +3
Query: 87 RLQRSRKKHGEDLPTGGRSRRKGEKLE*MQREEQ 188
RL+R RK + D+ G + +GEKLE + +E+
Sbjct: 57 RLERLRKGYARDVRAAGAMKVRGEKLENWREKEK 90
>05_01_0028 +
182528-183852,183967-184127,184872-185116,185330-186073
Length = 824
Score = 29.1 bits (62), Expect = 4.4
Identities = 22/79 (27%), Positives = 28/79 (35%)
Frame = -1
Query: 727 PXASXHPXXGFRXHQPDHQIPDSXHQPPPDLTSISINPLTPY*KEFAPGLKPPLSSEAPS 548
P P R H+ P PPP SIS P P AP P + + PS
Sbjct: 73 PPPPPAPRPPRRHHRIPPPPPPLLPTPPPPPASISPTPAPPLPPPPAPAPPPTPTPKFPS 132
Query: 547 AYLTPSSLGMAKGVSPPYF 491
+ PS + P+F
Sbjct: 133 SSANPSPPDAYPFTNYPFF 151
>09_04_0737 -
19822822-19822973,19823069-19823135,19823666-19823822,
19824003-19824177,19824364-19824481,19824676-19824874,
19824983-19825062,19825141-19825257,19825791-19825961,
19826121-19826597
Length = 570
Score = 28.7 bits (61), Expect = 5.8
Identities = 18/49 (36%), Positives = 25/49 (51%)
Frame = +1
Query: 79 FYVDSKGVGRNMARIYQLAVDLGGRERSLNRCREKSSFVVLKNRPDVVV 225
F+VD G G + ++++LAV+ G R CR VV DVVV
Sbjct: 93 FHVDPTGDGSSFLQLHRLAVE-GTRRLLAACCRSGVRTVVYTGSADVVV 140
>02_05_0640 - 30558523-30559027,30559123-30559252,30559388-30559868,
30560292-30560346,30560537-30560613,30561228-30561315,
30561490-30561593,30562050-30562231,30562347-30563109,
30563195-30563438,30564513-30564658,30565158-30565283,
30565404-30565517,30565595-30565762,30566283-30566528,
30566605-30566767,30566970-30567064,30567274-30567357,
30567769-30568055,30568359-30568572,30568923-30569140,
30569386-30569623,30570312-30571118,30571202-30571301,
30571694-30571737,30571824-30571973
Length = 1942
Score = 28.7 bits (61), Expect = 5.8
Identities = 20/65 (30%), Positives = 30/65 (46%)
Frame = -2
Query: 246 PPFDTVLYDNIRTVLKDNKTALLSASIQASLPSSEIYRQLVDPRHVSSDSFGVYVKS*SL 67
P F T+LY ++KD S+ L S+ Y L+DP S D+ + +
Sbjct: 1349 PEFHTLLYAEAARIIKDCWWLADSSRPVKELDSAVGYA-LLDPTWASQDNTSTAIGNIVA 1407
Query: 66 ILHSF 52
+LHSF
Sbjct: 1408 LLHSF 1412
>03_05_0728 - 27174157-27174408,27175316-27175364,27175454-27175536,
27175673-27175753,27175838-27175894,27176103-27176202,
27176280-27176350,27176427-27176567,27176657-27176863,
27177442-27177612,27177735-27177815,27177887-27177940,
27178040-27178154,27178302-27178441,27178976-27179197,
27179278-27179376,27179461-27179580,27179776-27179981,
27180072-27180249,27180426-27180486,27180587-27180696,
27180765-27180896,27181124-27181165,27181592-27181762,
27181806-27181808,27181848-27181974,27182130-27182164,
27182982-27183083,27183167-27183224,27183314-27183415,
27183513-27183659,27183744-27183880,27183973-27184122,
27184234-27184393,27184930-27185075,27185162-27185305,
27185535-27185663,27186376-27186420,27187103-27187192,
27187473-27187475
Length = 1506
Score = 28.3 bits (60), Expect = 7.7
Identities = 13/37 (35%), Positives = 21/37 (56%), Gaps = 1/37 (2%)
Frame = -1
Query: 712 HPXXGFRXHQPDHQI-PDSXHQPPPDLTSISINPLTP 605
+P F+ P++ + P +P PD+T IS+NP P
Sbjct: 1052 YPKSPFQLKTPENGVAPYGEVKPLPDITPISLNPKEP 1088
>01_05_0014 - 17162664-17163500
Length = 278
Score = 28.3 bits (60), Expect = 7.7
Identities = 19/68 (27%), Positives = 31/68 (45%), Gaps = 5/68 (7%)
Frame = -1
Query: 685 QPDHQIPDSXH-QPPPDLTSISINPLTPY*--KEFAPG--LKPPLSSEAPSAYLTPSSLG 521
QP +P S PP + + NP P+ + +P +K + ++P+ TP LG
Sbjct: 47 QPLATVPGSLQIWSPPASSLVRPNPPRPHSAARSLSPRHVIKTKIRGDSPARQPTPGELG 106
Query: 520 MAKGVSPP 497
+ K PP
Sbjct: 107 LLKAAPPP 114
Database: rice
Posted date: Oct 4, 2007 10:57 AM
Number of letters in database: 14,793,348
Number of sequences in database: 37,544
Lambda K H
0.318 0.134 0.401
Gapped
Lambda K H
0.279 0.0580 0.190
Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 20,997,956
Number of Sequences: 37544
Number of extensions: 465392
Number of successful extensions: 1324
Number of sequences better than 10.0: 8
Number of HSP's better than 10.0 without gapping: 1260
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 1321
length of database: 14,793,348
effective HSP length: 81
effective length of database: 11,752,284
effective search space used: 2232933960
frameshift window, decay const: 40, 0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)
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