Bombyx BLAST Result against spombe

BLASTX 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= BmNP11_T7_E03
         (788 letters)

Database: spombe 
           5004 sequences; 2,362,478 total letters

Searching..................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

SPAC15F9.02 |seh1||nucleoporin Seh1 |Schizosaccharomyces pombe|c...    27   3.1  
SPBC337.03 |||conserved eukaryotic protein|Schizosaccharomyces p...    27   3.1  
SPBC800.09 |sum2||G2/M transition checkpoint protein Sum2|Schizo...    27   4.0  
SPCC622.14 |||GTPase activating protein |Schizosaccharomyces pom...    26   5.4  
SPAC222.09 |seb1||RNA-binding protein Seb1 |Schizosaccharomyces ...    23   8.8  
SPAC1687.22c |puf3|SPAC222.02c|RNA-binding protein Puf3 |Schizos...    25   9.4  

>SPAC15F9.02 |seh1||nucleoporin Seh1 |Schizosaccharomyces pombe|chr
           1|||Manual
          Length = 339

 Score = 27.1 bits (57), Expect = 3.1
 Identities = 15/44 (34%), Positives = 19/44 (43%)
 Frame = -2

Query: 664 LRVHHFAEGGXGTREGELIPXRTYPSPPSQGPQKGFCPTSAPVR 533
           LR++   E G  T    +      PSPPS+  Q  FC    P R
Sbjct: 137 LRIYEAMEPGNLTYWTLMNEIALMPSPPSRNEQPAFCVNWCPSR 180


>SPBC337.03 |||conserved eukaryotic protein|Schizosaccharomyces
           pombe|chr 2|||Manual
          Length = 387

 Score = 27.1 bits (57), Expect = 3.1
 Identities = 16/41 (39%), Positives = 19/41 (46%)
 Frame = +1

Query: 292 RIEGSETSAVSVRQPVGPPRRCRWCPGIPRWTRTSLPGRDA 414
           R   +E S  S   PVGPP    W P     T+TSL  + A
Sbjct: 128 RFNNAENSGHSNYYPVGPP---EWAPYTRLMTQTSLYAKSA 165


>SPBC800.09 |sum2||G2/M transition checkpoint protein
           Sum2|Schizosaccharomyces pombe|chr 2|||Manual
          Length = 426

 Score = 26.6 bits (56), Expect = 4.0
 Identities = 12/38 (31%), Positives = 16/38 (42%)
 Frame = -2

Query: 607 PXRTYPSPPSQGPQKGFCPTSAPVRGELPPVKVKGRPE 494
           P   YP+ P+Q    G  P   P+    P V   G P+
Sbjct: 136 PYYMYPNAPAQFVPPGGLPLGTPLDASTPAVPYYGAPD 173


>SPCC622.14 |||GTPase activating protein |Schizosaccharomyces
           pombe|chr 3|||Manual
          Length = 309

 Score = 26.2 bits (55), Expect = 5.4
 Identities = 14/45 (31%), Positives = 22/45 (48%)
 Frame = -3

Query: 426 STVYRVPTRQAGSGPAGYSGTPAAPSGRPDGLPYRDGRRFRAFDS 292
           STV  +P+    +    ++   +  S RPD LP   G R++ F S
Sbjct: 138 STVPTIPSVSKEANDKYFAKLGSINSQRPDDLPPSQGGRYQGFGS 182


>SPAC222.09 |seb1||RNA-binding protein Seb1 |Schizosaccharomyces
           pombe|chr 1|||Manual
          Length = 620

 Score = 22.6 bits (46), Expect(2) = 8.8
 Identities = 14/43 (32%), Positives = 20/43 (46%)
 Frame = -2

Query: 625 REGELIPXRTYPSPPSQGPQKGFCPTSAPVRGELPPVKVKGRP 497
           R G L   R+ PSP S  P++   P+   +   LPP     +P
Sbjct: 340 RLGSLHRSRS-PSPRSGRPRRSPSPSHLSIPSTLPPADGVPKP 381



 Score = 21.0 bits (42), Expect(2) = 8.8
 Identities = 7/13 (53%), Positives = 9/13 (69%)
 Frame = -2

Query: 430 PVDGVSRPDPAGW 392
           P DGV +P P G+
Sbjct: 374 PADGVPKPTPDGF 386


>SPAC1687.22c |puf3|SPAC222.02c|RNA-binding protein Puf3
           |Schizosaccharomyces pombe|chr 1|||Manual
          Length = 732

 Score = 25.4 bits (53), Expect = 9.4
 Identities = 10/28 (35%), Positives = 14/28 (50%)
 Frame = -3

Query: 393 GSGPAGYSGTPAAPSGRPDGLPYRDGRR 310
           G  P     TP APS    G P+ +G++
Sbjct: 95  GDSPDSLVSTPTAPSANHHGNPFPNGKQ 122


  Database: spombe
    Posted date:  Oct 4, 2007 10:57 AM
  Number of letters in database: 2,362,478
  Number of sequences in database:  5004
  
Lambda     K      H
   0.318    0.134    0.401 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 3,045,266
Number of Sequences: 5004
Number of extensions: 58831
Number of successful extensions: 170
Number of sequences better than 10.0: 6
Number of HSP's better than 10.0 without gapping: 159
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 170
length of database: 2,362,478
effective HSP length: 71
effective length of database: 2,007,194
effective search space used: 383374054
frameshift window, decay const: 40,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)